1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgagtccatttattaaaaatttctctagtctgttgatcctggtctgcgaacataggagaatctgttagttcacttccctattattggttgttttacacagGAAATACAAATCAGTGAAGATTTTGAAACGCATTAGGAACAGGAACAGAATAACTTATGGCAGAGAGAAAGACCCTGGAAAATGGCAGCAAGTAAAGCAA
species | Glycine max |
transcript | GLYMA13G33840.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGAAATCTGTTTTGGATCTTCTTATTTGTCAATGAGAATACTCACAAAAG GAAATACAAATCAGTGAAGATTTTGAAACGCATTAGGAACAGGAACAGAATEST: gi|254334364|gb|GR844149.1|GR844149
genomic: GGAAATCTGTTTTGGATCTTCTTATTTGTCAATGAGAATACTCACAAAAGgtcaattttc ... ttttacacagGAAATACAAATCAGTGAAGATTTTGAAACGCATTAGGAACAGGAACAGAAT
EST: GGAAATCTGTTTTGGATCTTCTTATTTGTCAATGAGAATACTCACAAAAG GAAATACAAATCAGTGAAGATTTTGAAACGCATTAGGAACAGGAACAGAAT
genomic: GGAAATCTGTTTTGGATCTTCTTATTTGTCAATGAGAATACTCACAAAAGgtcaattttc ... ttttacacagGAAATACAAATCAGTGAAGATTTTGAAACGCATTAGGAACAGGAACAGAAT
gcgaacataggagaatctgttagttcacttccctattattggttgttttacacagGAAATACAAATCAGTGAAGATTTTGAAACGCATTAGGAACAGGAACAGAATAACTTATGGCAGAGAGAAAGACCCTGGAAAATGGCAGCAAGTAAAGCAA
ttgtttt CT-rich tract
tattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgagtccatttattaaaaatttctctagtctgttgatcctggtctgcgaacataggagaatctgttagttcacttccctattattggttgttttacacagGAAATACAAATCAGTGAAGATTTTGAAACGCATTAGGAACAGGAACAGAATAACTTATGGCAGAGAGAAAGACCCTGGAAAATGGCAGCAAGTAAAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - -ccattta
- - - - - - - - - - - - - - tctgttg
- - - - - - - - - - - - - - - - - - - - ggtctgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgttag