Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

Basic information

species Glycine max
transcript GLYMA13G31130.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G040600_T01 (Zea mays), 3'ss of exon 5
---------gtatgg-ttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
          ||     |||||   || |  || |    | ||    |      ||     |  | ||  || ||  |  | |  |  | |||||||||       |||| ||||| |||||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||||||  |||
gagttgaatttacaaactttgggatgacttatttcttgatccatgactcttgctgatgtcatacttaaatataggtgtgatatgttcct-ttgttttgc-------agGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGGTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGCCTTCTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T09 (Zea mays), 3'ss of exon 3
gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
|||   ||| || || | |  || |    | ||    |      ||     |  | ||  || ||  |  | |  || | |||||||||       |||| ||||| |||||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
gtaaactttgggatg-acttatttcttgatccatgactcttgctgatttcatacttaaatataggtgtgatatgtttct-ttgttttgc-------agGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T08 (Zea mays), 3'ss of exon 3
-------gtatggttttggctggaatcc-ttccacagtgcagtgtttcctgagaaacattgatcaatgattg---gcttattctccttttcttgttttgctactt------gcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
       ||   | | ||| ||   |    |     |||   | |||| |||   |      |   |||||     ||||      |     || | || | |||      |||||| ||||| |||||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
gtcagtggtgatgctctgggtgaggtaaactttggggtgacttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttttgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T05 (Zea mays), 3'ss of exon 3
---------gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
         |||   ||| || || | |  || |    | ||    |      ||     |  | ||  ||     | |  |   ||||||  |||      ||||||| ||||| |||||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
ctgggtgaggtaaactttggggtg-acttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttt------tgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G054136_T01 (Zea mays), 3'ss of exon 3
gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
|||   ||| || || | |  || |    | ||    |      ||     |  | ||  ||     | |  |   ||||||  |||      ||||||| ||||| |||||||||||||| || |  || || || ||||||||||| || ||||||||||||||||| |||||  ||||||||||||| ||  |||
gtaaactttggggtg-acttatttcttgatccatgactcttgctgatttcatacttaaaaatataggtgtgatatgtttctttgttt------tgcagGAGTTCAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAGCAAGGCTTCCCAATGAAGCAAGGAGTTTTGACTTCTGGTCGTGTTCGTCTTCTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM5G851698_T02 (Zea mays), 3'ss of exon 3
gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgt-tttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
|||   |||  |||    |  |||     | || ||   |||       |||| | | |   |   | ||| |   | |  ||| |||  |  |||||||| || || |||||||||||||| || |  || || || ||||| ||||| || |||||||||||||||||  ||||  |||||||||| |||||  |||
gtaaattttctgctttcttatttct-tgatcca-tgccccct-------attgctgatttcatacttaattataggtgtgatgtgtttcttttttgcagGAGTTTAAGGGTTATGTCTTCAAGATCATGGGTGGATGTGACAAACAAGGCTTCCCAATGAAGCAAGGAGTTCTGACTTCTGGTCGTGTCCGCCTTCTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G10360.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatggttttggctggaatccttccac--agtgcagtgtttcctgagaaacattgatcaat--gattggcttattctccttttct-tgttttg--ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
             || |||  || | |   || ||||||||  |    |    |  | | |    |   ||||      || | | |||||||  ||| |||||||||||||| || || || ||||| || |  ||||| || ||||||||||| || |||||||| ||||||||  | || || || ||||| || || ||||
------------gtgaaattttttctcctggttcagtgtttttttctgatgtcttgtgagttcagtatacttaacagaattgtgtgtgttttgagctatttgcagGAATTCAAGGGATACGTATTCAAGATCATGGGAGGATGTGACAAGCAAGGTTTCCCAATGAAACAAGGAGTTCTCACTCCAGGGCGTGTCCGTCTTTTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 3
gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggct-tattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
|||  | ||    |    |   |      |   | || |   ||  | ||||    |     ||    | || |  || |    | ||| || |||||||| |||||||| || || ||||| || |  || |||||||| |||||||| || ||||||||||| ||||| ||||| || || ||||||||||| ||||
gtacagattccatttttcttactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatgaattgttgtta-ttgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G31700.2 (Arabidopsis thaliana), 3'ss of exon 1
--gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggct-tattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
  |||  | ||    |    |   |      |   | || |   ||  | ||||    |     ||    | || |  || |    | ||| || |||||||| |||||||| || || ||||| || |  || |||||||| |||||||| || ||||||||||| ||||| ||||| || || ||||||||||| ||||
aggtacagattccatttttcttactttgatctaatgagtgtgaagattagcatttcgaagcagatgatgatgttttgtttatgaattgttgtta-ttgcagGAGTTCAAAGGATACGTTTTCAAGATCAAGGGTGGTTGCGATAAGCAAGGTTTCCCAATGAAGCAGGGAGTTTTGACTCCAGGCCGTGTTCGCCTTTTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 3
gtatggttttggctggaatccttccacagtgc-agtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
||| |  |||  |    ||  ||   || ||| |   ||     |  |   | |||  ||       ||||| |  |||  ||||||   |     |||||||| || || ||||| |||||||| |  ||||| || ||||||||||| || ||||||||||| |||||||| || |||||||||||| | |||||||
gtaagcatttacc----attgttatgcaatgccaaaattctactatcagactagatttatataacatttatttttgtttgtttgtttgtgtg---acagGAATTTAATGGCTATGTATTCAAAATCATGGGAGGCTGTGACAAGCAAGGGTTCCCAATGAAGCAGGGAGTGTTAACTCCTGGTCGTGTTAGTCTCTTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 3
gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
||||| |||||  |   || ||||   ||   |   |  |||        ||| |  | || ||  |||||    | |  |     || |  |  ||||| ||||| |||||||| |||||||| |  ||||| || ||||||||||| |||||||||||||| |||||  ||||||| || || || |  ||  |||
gtatgattttg-ttactattcttct-taggataacttgccct--------ttgtt--aggaatgatttattgatgtatcttaagcgtgtt--tgacagGAGTTCAAGGGTTATGTATTCAAAATAATGGGAGGCTGTGACAAGCAAGGTTTTCCAATGAAGCAGGGAGTACTGACCCCAGGCCGAGTCCAACTTCTGC

upper sequence: GLYMA13G31130.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 3
gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
|||||  |||  |||   | || ||||         ||   |     | |||| |   ||||   || ||  | |    | |||  |     |  ||||| ||||| || ||||| ||||| || |  || ||||| ||||||||||| ||||| |||||||| |||||  |||| ||||| |||||| | || ||||
gtatgcctttt-ctgctcttctcccac---------ttatttatctcatattgtt---tgatctactaatcatacaaaacatgtcatctgcttcacagGAGTTCAAGGGCTATGTTTTCAAGATCATGGGTGGTTGTGACAAGCAAGGGTTTCCCATGAAGCAGGGAGTACTGACTCCTGGCCGTGTTAGTCTTTTGC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208176390|gb|GD978597.1|GD978597
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATT
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATT
EST: gi|298182669|gb|HO031404.1|HO031404
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATACTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|193708153|gb|FK642459.1|FK642459
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|151407299|gb|EV277114.1|EV277114
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|41145367|gb|CK605578.1|CK605578
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|11413313|gb|BF425324.1|BF425324
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|298173823|gb|HO017159.1|HO017159
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|151403312|gb|EV273122.1|EV273122
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCGAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|298175030|gb|HO018025.1|HO018025
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|298181172|gb|HO022611.1|HO022611
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|298190922|gb|HO038401.1|HO038401
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|17519909|gb|BM188951.1|BM188951
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|58017152|gb|CX703894.1|CX703894
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|18040763|gb|BM309057.1|BM309057
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|8283060|gb|BE020621.1|BE020621
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|10846367|gb|BF071320.1|BF071320
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|192326806|gb|FK018558.1|FK018558
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
EST: gi|17400921|gb|BM177703.1|BM177703
EST:     TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAG                         GAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA
genomic: TTTGGGACAAGAGGATCTCACAAGAGGTTGTTGGTGATGCTCTGGGTGAGgtatggtttt ... ctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC
     cattgat  putative branch site (score: 4)
                      cttattctccttttct  putative PPT
             aatgatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatggttttggctggaatccttccacagtgcagtgtttcctgagaaacattgatcaatgattggcttattctccttttcttgttttgctacttgcagGAATTCAAAGGTTATGTCTTCAAAATTACTGGAGGTTGCGACAAGCAAGGATTTCCAATGAAGCAAGGAGTGTTGACCCCTGGTCGTGTTCGCCTCTTGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG