1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gatttccttcaaggagttttagtttaatttgttgctttgtactgattcattttaattctgctggtccctacccttaagctcctttcaatttcttatgcagACGGTGTATTCGGAGCAATGATGAAG
species | Glycine max |
transcript | GLYMA13G30670.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGG ACGGTGTATTCGGAGCAATGATGAAGEST: gi|207754888|gb|GD727341.1|GD727341
genomic: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGGgtatgttatg ... tcttatgcagACGGTGTATTCGGAGCAATGATGAAG
EST: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGG ACGGTGTATTCGGAGCAATGATGAAGEST: gi|13478787|gb|BG508130.1|BG508130
genomic: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGGgtatgttatg ... tcttatgcagACGGTGTATTCGGAGCAATGATGAAG
EST: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGG ACGGTGTATTCGGAGCAATGATGAAGEST: gi|298182728|gb|HO031463.1|HO031463
genomic: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGGgtatgttatg ... tcttatgcagACGGTGTATTCGGAGCAATGATGAAG
EST: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGG ACGGTGTATTCGGAGCAATGATGAAGEST: gi|208305147|gb|GE102820.1|GE102820
genomic: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGGgtatgttatg ... tcttatgcagACGGTGTATTCGGAGCAATGATGAAG
EST: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGG ACGGTGTATTCGGAGCAATGATGAAG
genomic: CTCTTTAGTTGACAGGTTTAGGAATGCCTATAACTCTGATGCAATCAAGGgtatgttatg ... tcttatgcagACGGTGTATTCGGAGCAATGATGAAG
ttcattttaattctgctggtccctacccttaagctcctttcaatttcttatgcagACGGTGTATTCGGAGCAATGATGAAG
ttttaat putative branch site (score: 3)
ctcctttcaatttctt putative PPT
tttcaatttcttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatttccttcaaggagttttagtttaatttgttgctttgtactgattcattttaattctgctggtccctacccttaagctcctttcaatttcttatgcagACGGTGTATTCGGAGCAATGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - tccttca
- - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - -ctgattc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cctttca