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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtttctctcaaccattgtgcaactattattacagtttgctatatactttcatgataattaatatacttgatttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT

Basic information

species Glycine max
transcript GLYMA13G29520.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29520.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g54480.1 (Oryza sativa), 3'ss of exon 4
--------------gtgagtttctctcaaccattgtgcaacta---ttattacagtttgctatatactt--tcatgataat---------taatatacttgatt------tttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT
               |||||     |||   | |||   |||    || || || ||   | || |||   ||   | |||         | | | | | ||||        |  |||  | || |||||||||||||||| | || | ||   ||| |||||||| |||||||| |||||| | |||||||| || || || || ||||||||||||
gtgggttggttccattgagtagtattcagttactgttttactcgtcttttttcacttaattgtagactccgtctgaaaaatgtagttccctgacagattagattggtttgcattgcagACAAGCATTCAGAGATGAGCTTGATGTGCTACAACTAATACGGCATCCGAATGTCGTGCAATTTTTAGGTGCTGTAACACAAAGCAGCCCAATGATGATT

upper sequence: GLYMA13G29520.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G045366_T01 (Zea mays), 3'ss of exon 4
gtgagtttctctcaaccattgtgcaactattattacagtttgctatatactttcatgataattaatatacttgatttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT
||| ||   |  ||    ||      ||||  |  |  |||  | ||  |||  || ||   | |||   | |||   | ||||| |||| |||||||| ||||||| | || | ||    || || ||||||||||| || |||||| |||| |||||||| || || | |||||||||||||
gtgggtagtttccacttgtttctggtctatgttggc--tttattttacccttctattatc-ctgatagtttggatgccttacagGCAGGCATTCAGAGACGAGCTTGATGTGCTGCAACTTATACGTCATCCAAATGTTGTGCAATTTTTGGGCGCTGTGACACAAAGCAATCCAATGATGATT

upper sequence: GLYMA13G29520.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g02060.t01 (Vitis vinifera), 3'ss of exon 4
--------------------gtgagtttctctcaaccattgtgcaactattattacagtttgctatatactttcatgataattaatatacttgatttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT
                     |||||||   |      |||||    ||||  | | | | | |   | |||| ||     | ||     ||| |||| ||||||||||| || ||||||||||||||  || | ||||| || || ||||| ||||| ||||| |||||||||||||| || || ||||||||||||||||||
gtgggttttcaatactagcaatgagttttgatttttatttgtggccttatttctgctggtagat---tgcttttatccatctgaaagctgttggttttgcacagGAAGGCATTTAGAGATGAGCTTGCATTGCTTCAGAAGATACGACATCCCAATGTAGTCCAGTTTCTGGGTGCTGTAACTCAAAGTAGTCCAATGATGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattacagtttgctatatactttcatgataattaatatacttgatttttcacagGAAGGCTTTCAGAGATGAGCTTGCTCTGTTCCAGAAAATCCGGCATCCAAATGTCGTCCAATTTCTGGGTGCTGTGACCCAGAGTAGTCCAATGATGATT
                                             tttttcac  CT-rich tract
              tatatactttcatgat  TA-rich tract