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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttttcgaaaataacatttatataacttggactaaattgaatattcaattgcagtaattattatcttgcacaaaatggctgaacacttcatattgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG

Basic information

species Glycine max
transcript GLYMA13G29400.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29400.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G090647_T04 (Zea mays), 3'ss of exon 3
ttttcgaaaataacatttatataacttggactaaattgaatattcaattgcagtaattattatcttgcacaaaatggctgaacacttcatattgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG
     |  | |   |   ||||| |||  | |    |     |||  || |       || || ||  |  |||      |  || |     | |   ||||| |||||| ||||||| ||||||||||| ||||| |||| ||||||| |  | |||
-----gttagttttagagatatagcttttattttccttgtccttctctttctcatggcatgatatt-tatgaaa-----aattaccttgacataatccagGTTTATCAATAGAGAAGGTATTGACTTTTCTGATGCTCAAAACATGCAGCCAGTGCAG

upper sequence: GLYMA13G29400.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv04s0008g00760.t01 (Vitis vinifera), 3'ss of exon 4
---------------------------------------------------------------------ttttcgaaaataacat--ttatataacttggactaaat-tgaatattcaattgcagtaattattatcttgcac------aaaatggctgaacacttcatattgaa--ttagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG
                                                                       |    |   ||| |  | || |  ||| ||| |  | |  ||| |  ||||   |   |   |  |   |       ||||   || |     || | |||||  | |||||||| |||||||| || ||||| ||||||||||| ||||| |||||  ||||||||
gtaagtttgtccttctgaacccatggaattattataacagtgagcttgttttttattcgggattcctcacataaagagggaacttgataatgtttctttgaccagctgtatatagttcattgtttttccttccaaataaaaaggggggaaaaaaactaagtctgtcctgttgaaattcagGTTCATTAATCGAGATGGGATTGATTTTTCAGATGCTCAAAGTATGCAATCTATTCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193350168|gb|FK317830.1|FK317830
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAAGAAGGAATTGACTTT
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGA-GAAGGAATTGACTTT
EST: gi|254342188|gb|GR853325.1|GR853325
EST:     CAAGATGAGAGT                         G-TCATCAATCGAGAAGGGAATTGACTTTTCAGATGCGCAAAGCATGCAGG
genomic: CAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAA-GGAATTGACTTTTCAGATGCGCAAAGCATGCAGG
EST: gi|11690379|gb|BF598055.1|BF598055
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|254317765|gb|GR826749.1|GR826749
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|193658986|gb|FK602111.1|FK602111
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298178150|gb|HO027533.1|HO027533
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|207764167|gb|GD737982.1|GD737982
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298192219|gb|HO036301.1|HO036301
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCACAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|151402759|gb|EV272572.1|EV272572
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298164736|gb|HO014381.1|HO014381
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGGGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|21888807|gb|BQ742020.1|BQ742020
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298180957|gb|HO022396.1|HO022396
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298192873|gb|HO033307.1|HO033307
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|254317766|gb|GR826750.1|GR826750
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|208116855|gb|GD915809.1|GD915809
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|208084942|gb|GD882778.1|GD882778
EST:     ATCCATAGTTGGTGGAGCTGATGGAACAAGTTCCTTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATCCATAGTTGGTGGAGCTGATGGAACAAG-TCC-TTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298167595|gb|HO012858.1|HO012858
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|192294103|gb|FG986192.1|FG986192
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|8402306|gb|BE057940.1|BE057940
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|207843207|gb|GD816809.1|GD816809
EST:     AGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: AGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|192300261|gb|FG987838.1|FG987838
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCACGCAGAC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298171596|gb|HO021188.1|HO021188
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|254315527|gb|GR825336.1|GR825336
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298169227|gb|HO020587.1|HO020587
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298189728|gb|HO038131.1|HO038131
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298166356|gb|HO008593.1|HO008593
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298175426|gb|HO015059.1|HO015059
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298179820|gb|HO025035.1|HO025035
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTCTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298196871|gb|HO041614.1|HO041614
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298172694|gb|HO019734.1|HO019734
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|20498002|gb|BQ272932.1|BQ272932
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|151393588|gb|EV263463.1|EV263463
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCCCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298163228|gb|HO011961.1|HO011961
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|254342187|gb|GR853324.1|GR853324
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298183628|gb|HO028841.1|HO028841
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|208265558|gb|GE063086.1|GE063086
EST:     TATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: TATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|51336638|gb|CO980504.1|CO980504
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|151412116|gb|EV281928.1|EV281928
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
EST: gi|298183208|gb|HO028193.1|HO028193
EST:     ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGT                         GTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC
genomic: ATATCCATAGTTGGTGGAGCTGATGGAACAAGTCCTTCCAAGATGAGAGTgtaagtttac ... attgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattgcagtaattattatcttgcacaaaatggctgaacacttcatattgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG
      agtaattattatctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttttcgaaaataacatttatataacttggactaaattgaatattcaattgcagtaattattatcttgcacaaaatggctgaacacttcatattgaattagGTTCATCAATCGAGAAGGAATTGACTTTTCAGATGCGCAAAGCATGCAGGCTATTCAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - aaaataa
- - - - - - - - - - - - cttggac
- - - - - - - - - - - - - - - - - - - - - - - - tgcagta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacttca