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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagacacagaaattaatgatagataatatacgcattgttttttgtatttaagcatattccttgacttcttgctgatgtttaaccagGTTGCCTCTTTTACTGGTGAGAAAAAAGCAATAGAGAAATATAATAATAAGTTAAGAATTGCTTATGCTACAACTGTTCAACAAGGGTTGGCCTCAGGGT

Basic information

species Glycine max
transcript GLYMA13G29380.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G29380.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv10s0003g02540.t01 (Vitis vinifera), 3'ss of exon 4
gtaagacacagaaattaatgatagataatatacgcattgttttttgtatttaagcatattccttgacttcttgctgatgtttaaccagGTTGCCTCTTTTACTGGTGAGAAAAAAGCAATAGAGAAATATAATAATAAGTTAAGAATTGCTTATGCTACAACTGTTCAACAAGGGTTGGCCTCAGGGT
||||| ||| || || || || | | | | || || || | ||| | || | | || ||| | || |||||| || || ||||| || || ||||| || | || ||| |||||||| | ||||| |||||| | ||||||||||||||| ||||||||||
gtaaggcactgag-ttcatacaagcttaaacaaatatatattcttcaaattac-----taactcaattctctgtggatctgcaa---gGTTGCATCATTCACTGGGGAAAAGAAAGCGATCAAAAACTATGATAATAAGCTGCATATTGCGTATGCTTCCACTGTTCAACAAGGGCTGGCCTCAGGCA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcattgttttttgtatttaagcatattccttgacttcttgctgatgtttaaccagGTTGCCTCTTTTACTGGTGAGAAAAAAGCAATAGAGAAATATAATAATAAGTTAAGAATTGCTTATGCTACAACTGTTCAACAAGGGTTGGCCTCAGGGT
                                      tgctgat  putative branch site (score: 3)
 ttttttgtatttaagc  TA-rich tract