1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gattctgctaatgggaagcatttgtttttgtactgcatttttacatagcaagaatagagacatgacatctagcctctaattttatgcttttcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTTAATGACATCATAATAAAACCTGCTGACCGTCATAATCTTTTGAGACCTG
species | Glycine max |
transcript | GLYMA13G28910.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAG GAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTTEST: gi|6455624|gb|AW186307.1|AW186307
genomic: CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagat ... tcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
EST: CAGTGACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAG GAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATATGTT
genomic: CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagat ... tcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
tagcaagaatagagacatgacatctagcctctaattttatgcttttcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTTAATGACATCATAATAAAACCTGCTGACCGTCATAATCTTTTGAGACCTG
ctctaat putative branch site (score: 3)
tgcttttc putative PPT
taattttatgctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gattctgctaatgggaagcatttgtttttgtactgcatttttacatagcaagaatagagacatgacatctagcctctaattttatgcttttcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTTAATGACATCATAATAAAACCTGCTGACCGTCATAATCTTTTGAGACCTG
- ttctgct
- - - - - - - - -gcatttg
- - - - - - - - - - - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - - - - - - - -gcaagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttatgc