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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gattctgctaatgggaagcatttgtttttgtactgcatttttacatagcaagaatagagacatgacatctagcctctaattttatgcttttcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTTAATGACATCATAATAAAACCTGCTGACCGTCATAATCTTTTGAGACCTG

Basic information

species Glycine max
transcript GLYMA13G28910.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17400772|gb|BM177554.1|BM177554
EST:     CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAG                         GAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
genomic: CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagat ... tcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
EST: gi|23726311|gb|BU761144.1|BU761144
EST:     CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAG                         GAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
genomic: CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagat ... tcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT
EST: gi|6455624|gb|AW186307.1|AW186307
EST:     CAGTGACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAG                         GAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATATGTT
genomic: CAGTAACTTCAACTGGTCTTGCTCCTGAAATTGCTTACTTTCATACTGAGgttagtagat ... tcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcaagaatagagacatgacatctagcctctaattttatgcttttcatacccagGAATTTTCTGAAGAAGGTCATGATGGAGGAAATAAGAGCTCGGAATTTGTTAATGACATCATAATAAAACCTGCTGACCGTCATAATCTTTTGAGACCTG
                            ctctaat  putative branch site (score: 3)
                                       tgcttttc  putative PPT
                               taattttatgctttt  TA-rich tract