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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctgttttgttttctgatcatggaaatattttgatccgagtttgaatgtttataaatatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC

Basic information

species Glycine max
transcript GLYMA13G28820.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28820.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os01g15460.2 (Oryza sativa), 3'ss of exon 4
gtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctgttttgttttctgat-catggaaatattttgatccgagtttga-atgtttataaatatgata-acagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC
                                     |  ||   |     ||    | ||| ||  | || ||      | |  || |  ||    || |||||  || | || | |  ||||||||||||||||| ||||| ||  ||||||| || ||||| || |||||  | || ||||||||||||||||| |     | |||  | |  ||  | |
-------------------------------------gtgtgaaatctctcgtaaaatattgcttattcatacacttgtttttcctgttttgaaaaagagatgttggtacaaataaaatgcagGGTGAGAAGGAGTGCTCCTACTACATGAAAACTGGGCAATGTAAATTTGGAACTACATGTAAATTCCATCATCCGGAATTCGGTGGTGTTCCGATGACCC

upper sequence: GLYMA13G28820.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G069009_T01 (Zea mays), 3'ss of exon 4
gtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctgttttgttttctgatcatggaaatattttgatccgagtttgaatgtttataaatatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC
                                  | ||  | ||  |      ||    ||  | | | |||  |||  |  |||| |     | ||||   ||  |  | | ||  |||||||| ||||| |||||||||||  ||||||| ||||| ||||||||||| || || |||||||||||||| ||||  | || |  | |        | |
---------------------------------gtgggtgttctcattg-caatccacgtttctgtttaatctaggatcttgtttgtttattttatgaaaaattccatgtttaatg-cagGGTGAAAAGGAATGTTCCTATTACATGAAAACTGGACATTGCAAGTTTGGAGCTACATGTAAATTCCATCACCCAGAACTTGGTTTCCTTACGGAGACGC

upper sequence: GLYMA13G28820.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G036837_T02 (Zea mays), 3'ss of exon 4
gtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctgttttgttttctgatcatggaaatattttgatccgagtttgaatgtttataaatatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC
                               |  |  | || ||  |     || |||||     |  |||  |  || |||| |      |  |  |||    || |||    |  ||||||||||| || || ||||| ||| |||| || || ||||||||||||||| | || |||||||| ||||||||||    || ||| || |   |  | |
-------------------------------gtatgagaattctcctatg-attgtgtttc----ttggattttttaagtattattggaaaaaat--aattgacattaatgaagtg-cagGGTGAGAAAGAATGCTCCTACTATATGAAGACTGGGCAATGCAAGTTTGGTTCTACATGTAAATTTCATCATCCAGAATTTGGTGGTATTCCGGTGACCC

upper sequence: GLYMA13G28820.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G086994_T01 (Zea mays), 3'ss of exon 4
gtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctgttttgttttctgatcatggaaatattttgatccgagtttg----aatgtttataaatatgata-acagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC
                                            | |||   ||||  | ||  |     || | | || ||||| | | |  ||||    ||  |||| |   |||| |  ||||||||||| || || ||||| ||| |||| || || ||||||||||||||| | || |||||||| ||||||||||    || ||| || |   |  | |
-------------------------------------------gtatgagaattctcctatggatgtgcttctttgtaacatttttaactgtttttgggaaaaaatttacattaatgaaatgcagGGTGAGAAAGAATGCTCCTACTATATGAAGACTGGGCAATGCAAGTTTGGTTCTACATGTAAATTTCATCATCCAGAATTTGGTGGTATTCCGGTAACCC

upper sequence: GLYMA13G28820.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G086994_T03 (Zea mays), 3'ss of exon 4
gtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctgttttgttttctgatcatggaaatattttgatccgagtttg----aatgtttataaatatgata-acagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC
                                            | |||   ||||  | ||  |     || | | || ||||| | | |  ||||    ||  |||| |   |||| |  ||||||||||| || || ||||| ||| |||| || || ||||||||||||||| | || |||||||| ||||||||||    || ||| || |         
-------------------------------------------gtatgagaattctcctatggatgtgcttctttgtaacatttttaactgtttttgggaaaaaatttacattaatgaaatgcagGGTGAGAAAGAATGCTCCTACTATATGAAGACTGGGCAATGCAAGTTTGGTTCTACATGTAAATTTCATCATCCAGAATTTGGTGGTATTCCG-------

upper sequence: GLYMA13G28820.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G069009_T02 (Zea mays), 3'ss of exon 4
gtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctgttttgttttctgatcatggaaatattttgatccgagtttgaatgtttataaatatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC
                                  | ||  | ||  |      ||    ||  | | | |||  |||  |  |||| |     | ||||   ||  |  | | ||  |||||||| ||||| |||||||||||  ||||||| ||||| ||||||||||| || || |                                          
---------------------------------gtgggtgttctcattg-caatccacgtttctgtttaatctaggatcttgtttgtttattttatgaaaaattccatgtttaatg-cagGGTGAAAAGGAATGTTCCTATTACATGAAAACTGGACATTGCAAGTTTGGAGCTACAT------------------------------------------

upper sequence: GLYMA13G28820.1 (Glycine max), 3'ss of exon 4
lower sequence: GRMZM2G475017_T03 (Zea mays), 3'ss of exon 4
gtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctgttttgttttctgatcatggaaatattttgatccgagtttgaatgtttataaatatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC
                                     |   |  ||   || |  |||||   | | | |||  |||  |  |||  |     | ||||  |||     | | ||   ||||||| ||||| ||||| |||||  ||||||| ||||| ||||| ||||| |  || |||||||||||||| ||||  | || |    |   |    | |
-------------------------------------gtgggtgttctcatttcatgtttc--tgtttaatctaggatcttgtttatttattttatgaaaatttcgtggt-taatg-tagGGTGAAAAGGAATGTTCGTATTACATGAAAACTGGACATTGCAAATTTGGAGGTACATGTAAATTCCATCACCCAGAACTTGGTTTTCTTACAGAGACGC

upper sequence: GLYMA13G28820.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g01650.t01 (Vitis vinifera), 3'ss of exon 4
gtctgtatcactttttgtatttactacataaggctaggcatgcttttgaatgttctgttttgttttctgatcatggaaatattttgatccgagtttg---aatgtttataaatatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC
       ||  | |||||    |||   |         | || |  ||   | | | ||    |  |  | | || |    |||  |    |||| |   || | ||  | || |    ||||||||| || ||||| ||||| |||||||| |||||||  ||||||||||||| ||| ||||||||||||||||||   || | | |||| ||| |  || 
------gtctgtgtttgttgcaactttttttaatctatcctgttaatgttagatttattggaatcacatagcctgaag---tttgcagttaagttggctcaaagcttg-atatgttgctacagGGTGAAAAAGAGTGCTCCTACTATGTGAAGACAGGACTTTGCAAGTTTGGTGAAACATGTAAATTCCATCATCCACAGCCAGATAGCATACAACTGTCAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgatcatggaaatattttgatccgagtttgaatgtttataaatatgataacagGGTGAGAAGGAGTGTTCCTATTATGTGAAAACAGGACAATGCAAGTTTGGTGCAACTTGTAAATTCCATCATCCAGTTCCTGCTGGCATCCAAATTCCAC
                            tttgaatgtttataaa  TA-rich tract