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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctaccgtatacatgctagtaactgattaacaggctgccaaatgcatttgcagATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGT

Basic information

species Glycine max
transcript GLYMA13G28460.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28460.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G18830.3 (Arabidopsis thaliana), 3'ss of exon 4
gtattttaaagcattgt-tattgcagtttagtatttgaatagtggcaagatcttctaccgtatacatgctagtaactgattaacaggctgccaaat-gcatttgcagATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGT
||||| | ||| ||| | |||| ||||||||| ||  ||    | | |  | | |   |  | |    | |  |||| || | |  ||    || | | ||||||||||||| ||||||||||| |  |||||||| ||| ||||||| ||||||||||| || ||||| ||  ||||  | ||||| ||||||||  | || ||||
gtattctcaagaattatatattacagtttagtgttcaaa----gactatgtttaccttctcagaatctcaaagaactaat-atcttgcgattaatttgaatttgcagATATTTCAATGGTTGGCCAACATGCCTGTTGAGCTGGAGGGCTATATCCGCCCAGGATGTACAATTTTGACTGTCTTTATAGCAATGCCAGAGATTATGT

upper sequence: GLYMA13G28460.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g02160.t01 (Vitis vinifera), 3'ss of exon 4
gtattttaaagcattgttattgcagtttagtatttgaatagtggcaagatcttctaccg--tatacatgctagtaactgattaacaggctgccaaatgcatttgcagATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGT
||||||||||| ||| ||||| |||||||||||||  ||      ||    || ||      | | || | || ||   |||||||  ||||  ||||  ||| ||||| ||||| |||||||| || |||||| | ||||||||||| |||||||| ||||||||||  ||| | |||||||||||||||||||| ||  | ||||
gtattttaaaggattattattacagtttagtatttatatgagaataaatgtttttataagtcagagataccaggaatatattaacacactgctcaatgtgtttacagATTTTCCAGTGGTTGGCTAGCATGCCTATTGAGTTGGAGGGCTATATCCGTCCTGGGTGTATCATCTTAACAATTTTTATTGCAATGCCAAAGTTTATGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19348335|gb|BM892867.1|BM892867
EST:     AGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAA                         ATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGC
genomic: AGCTTTATGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGACATCAAgtattttaaa ... gcatttgcagATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttctaccgtatacatgctagtaactgattaacaggctgccaaatgcatttgcagATATTCCAATGGTTGGCAAGTATGCCTGTGGAGTTGGAGGGATATATCCGCCCTGGGTGTACGATCCTGACAATTTTTATTGCAATGCCTAACATCATGT
         tatacat  TA-rich tract