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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgagagaaccccaaagccaacttcattttggagtttctttttgagtgcataaatgtttacacaacctgaaaaatttaacccaaattttgatttgtgcttcagAGTCAGAAAGGGGAGAACGAGAAAGAAAAGGGGATCTTGACCAATATGAACGTGCGGATGGGGATAGAAATGTAACTAGCAGACTTCTTGCAGTTAAGAA

Basic information

species Glycine max
transcript GLYMA13G28300.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28300.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g02350.t01 (Vitis vinifera), 3'ss of exon 5
gtttgagagaaccccaaagccaacttcattttggagtttctttttgagtgcat-aaatgtttacacaacctgaaaaatttaacccaaattttgatttgtgcttcagAGTCAGAAAGGGGAGAACGAGAAAGAAAAGGGGATCTTGACCAATATGAACGTGCGGATGGGGATAGAAATGTAACTAGCAGACTTCTTGCAGTTAAGAA
||||  ||  |    |||    |     |||||    |||| |   || |  | ||  || |    ||  ||  | || |        | ||  ||  || ||||||||||||||||| ||||||||| || |||||||||||||| || ||||| ||   |||||||||||||||   ||| |||  |  ||||||  |||||||
gtttttgaaga----aaattagatgatcttttgtgtgttctgtgcaagagttttaagggtatctgaaatttgtcagatct--ttattttcttacttcatgtttcagAGTCAGAAAGGGCAGAACGAGAGAGGAAAGGGGATCTTGATCAGTATGAGCGCTTGGATGGGGATAGAAACCAAACCAGCCAATATCTTGCTATTAAGAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaatgtttacacaacctgaaaaatttaacccaaattttgatttgtgcttcagAGTCAGAAAGGGGAGAACGAGAAAGAAAAGGGGATCTTGACCAATATGAACGTGCGGATGGGGATAGAAATGTAACTAGCAGACTTCTTGCAGTTAAGAA
                                  aaattttgatttgt  TA-rich tract