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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagactgagaatagttattggaatctgactgaaatgtagatattgtcttttcaactttaatttaggtacctgtcacatgaaattttttgtgtagGTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACATTTTTAGGCCTTTGGTTGGCAACTCTTCGTCTTGTTCAAAGG

Basic information

species Glycine max
transcript GLYMA13G28070.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G28070.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv05s0020g02570.t01 (Vitis vinifera), 3'ss of exon 4
----gtaagactgagaatagt--tattggaat------ctgactgaaatgtagatattgtcttttcaactttaatttaggtacctgtcacatgaaattttttgtgtagGTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACATTTTTAGGCCTTTGGTTGGCAACTCTTCGTCTTGTTCAAAGG
     ||||  |  |    ||    ||| |||       | |||| ||| || | |      |  | |   |||| ||  | | |||         | ||||||  |||||||||||||   || | |||||| ||||||||| | ||||||||||| ||||| || |||||| | ||| ||||||||||||||||||||
gtaaataagtttttgtcctgtatccttgaaatatttttttcactggaatatacaaaaca--gtaactatcataatgtaaatccatgtttt------tattttgtacagGTTTGATAAAGGTTCTTCAAGCAATTAATGGCACCACCTGGCATGACACCTTTTTGGGTCTTTGGATTGCAGCTCTTCGTCTTGTTCAAAGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atattgtcttttcaactttaatttaggtacctgtcacatgaaattttttgtgtagGTTTGATAAAGACCCTGCGAGCAATAAATGGCACCTCTTGGCATGACACATTTTTAGGCCTTTGGTTGGCAACTCTTCGTCTTGTTCAAAGG
               ctttaat  putative branch site (score: 4)
                                           ttttttgt  putative PPT
        ttttcaactttaattt  TA-rich tract