Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tttccagaagatgatggatagtcaaattaataaattggtaatctggataaaatatttgatgaatgacacatgtttttctaacttttgtttctcccatcagGGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAG

Basic information

species Glycine max
transcript GLYMA13G25690.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31561921|gb|CD487759.1|CD487759
EST:     CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCG                         GGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAGGTC
genomic: CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGgtaggcatca ... ctcccatcagGGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAGGTC
EST: gi|19053359|gb|BM732026.1|BM732026
EST:     CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCG                         GGAATAGTTCGAGGAAAAGTTG-ATCAGTTGCGGCGGTGCTTTGAG
genomic: CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGgtaggcatca ... ctcccatcagGGAATAGTTCGAGGAAA-GTTGGATCAGTTGCGGCGGTGCTTTGAG
EST: gi|16346940|gb|BI972535.1|BI972535
EST:     CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCG                         GGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAG
genomic: CAAATGTTCGTGAGCTTGAAGATTTTCTAATTAATGAATGCATGTATGCGgtaggcatca ... ctcccatcagGGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gataaaatatttgatgaatgacacatgtttttctaacttttgtttctcccatcagGGAATAGTTCGAGGAAAGTTGGATCAGTTGCGGCGGTGCTTTGAG
                              ttctaac  putative branch site (score: 1)
                           tttttctaacttttgt  CT-rich tract
     aatatttgatgaat  TA-rich tract