1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttggcattcaattgcatagaggaagtgtcttggaattatatgcactaatttaggttctgctttagtactactagtaggtatttatatttttgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCATCACGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATA
species | Glycine max |
transcript | GLYMA13G25460.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAGTGAGACGGAAAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|19452590|gb|BM954000.1|BM954000
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|298166217|gb|HO009188.1|HO009188
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTTTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|26049086|gb|CA785539.1|CA785539
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|192321114|gb|FK013560.1|FK013560
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|18725114|gb|BM523597.1|BM523597
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|213602689|gb|DB968915.1|DB968915
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|209707209|gb|BW656827.1|BW656827
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAEST: gi|14126115|gb|BG790553.1|BG790553
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAA
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTGCCAATAATCCEST: gi|209729488|gb|BW651841.1|BW651841
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|192299791|gb|FG990057.1|FG990057
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|19937699|gb|BQ081388.1|BQ081388
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCEST: gi|7591513|gb|AW707244.1|AW707244
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATAGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCGCAATAATCCEST: gi|209705878|gb|BW675983.1|BW675983
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
EST: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAG CTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTT-CCCAATAATCC
genomic: GAAGTGAGACGGAGAGAAGAAGCTGCTTCACGAGgtgatttaca ... tgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCC
taatttaggttctgctttagtactactagtaggtatttatatttttgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCATCACGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATA
cactaat putative branch site (score: 2)
tttttgtttt putative PPT
taggtatttatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttggcattcaattgcatagaggaagtgtcttggaattatatgcactaatttaggttctgctttagtactactagtaggtatttatatttttgttttgcagCTGGAATTGTTCTTGAGGAGAAGAATTGGCCGCCTTTTTTCCCAATAATCCATCACGACATTGCTAATGAAATTCCAATTCATCTTCAAAAATTGCAATA
- -gcattca
- - - - - -ttgcata
- - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - tatgcac