Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atatgcaatgacctttagctttcactagaaacctatttatgcaagattctcatagccatgcttgtttgcagtcttgttaatcttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAATCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT

Basic information

species Glycine max
transcript GLYMA13G24630.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os03g27260.1 (Oryza sativa), 3'ss of exon 4
atatgcaatgacctttagctttcactagaaacctatttatgcaagattctcatagccatgcttgtttgcagtcttgttaatcttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAATCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
 ||     | |   |  |||| || | |||   |  |||||    ||| |  |   |  ||  || | |     ||    |    |||  ||     |||| || || || |||||||||||||| |||||  |||| ||||| |||||||| || || ||||| ||||||||||||| ||| ||||||||| | |||||
gtagatgtttaagat--gcttacatttgaa---tggttatgtttcattttgctttgctggcaggtgttctaatgtgaatgttccatttttatactgacagGTACCCCCTGCTTCCGTGGATATGGCAGGCGTGATGGTGAGCGCAGAAGGAAGTCAGTCCGTGGTTGCATTGTCAGCCAAGATCTCTCTGTTATCAACTT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 4
lower sequence: AT4G31700.1 (Arabidopsis thaliana), 3'ss of exon 4
------atatgcaatgacctttagctttcactagaaacctatttatgcaagattctcatagccatgcttgtttgcagtcttgttaatc-----ttttttgcatt---tgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAATCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
      | |   |||  | |||  ||| ||||        || |||    ||||   ||     ||  ||| ||   |  |||  ||      | ||| | | |   ||| ||||||||||||| ||| | ||| |||||||| | | ||| ||| | ||||| || ||||||||||| |||||||| ||||| || ||||||||| ||||| |
gtaactaaacataatacctttt--cttacacttt---tgcatctataatggatttgtatttgtgtgtgtgtgtgttttgctgtagattaacattgtttcgtaatgggtgaacagGAACTCCTTGCTTCAGAGGACATGGAAGGAGAACTGGTGAGAGGAGAAGAAAGTCTGTTCGTGGTTGCATTGTGAGCCCTGATCTCTCTGTTCTGAACCT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0191g00060.t01 (Vitis vinifera), 3'ss of exon 4
-------------------------------------------------------------------------------atatgcaatgacctttagctttcacta--gaaacctatttatgcaagattctcatagcc--atgcttgtttgcagtcttgttaatcttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAATCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                                                                                |||      |  ||   || | |  |  |      |||| |   |   |    | ||   ||||||| |   | |  |   |||     ||    |||| |||| || ||||| ||||||||||||||||| || ||||||||||| || |||||  |||||||||| |||||||| ||||  |||||||| |||||||||||
gttggtagactggtctactactttgtgcatatttagatgtgaaacaattaaatgcagtttttatatattgttttggagtttatttgggcattttctcctgttagcattgtggttaatttgtctcattctgcatttgctcgatgcttgatgaaactaatacgaattggcattttgcttgaacagGCACCCCTTGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGATGCATTGTTAGCCAGGACCTCTCAGTTTTGAACTT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv03s0017g01350.t01 (Vitis vinifera), 3'ss of exon 4
----atatgcaatgacctttagctttcactagaaacctatttatgca---agattctcatagccatgcttgtttgc------agtcttgttaatcttttt-tgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAATCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
     ||  |   |||  ||     ||  || ||||  ||     |    |  |||  ||    ||||  ||| |       ||  || |||  |||| |    ||||||||||| || || || ||||||||||||||||| || ||||||||||| || |||||  |||||||||||||||||||||||| |||||||||||||||||||||
gtgagtaaactgggactgttc-taatccttaaaaactgatcacaacccttaagttcatatttttatgcaagttgggtctatgagatttattacactttatgcttatttgagcagGTACCCCATGCTTCCGTGGATATGGAAGACGTAATGGAGAGCGAAGGAGGAAGGCTGTTCGTGGGTGCATTGTCAGCCAAGACCTCTCTGTTTTGAACTT

upper sequence: GLYMA13G24630.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g06290.t01 (Vitis vinifera), 3'ss of exon 4
----------------------------------------------------atatgcaatgacctttagctttcactagaaacctatttatgcaagat----tctcatagccatgct-tgtttgcagtcttgttaatctttt--ttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAATCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                                                     | |   |||       ||      ||||| | | |||    | ||     | |  | ||| ||   |   ||  |  |    | | || |  ||    || ||||||||| ||||| || || |||||||| ||||| ||||||||| | || |||||  |||| |||||||||||||||||||  ||||| |||||| |||||||
gtgggtttttggtggtatattagtgttggtgcactgaccaccattccttcaagtttaagatggatcacggcca--gttagaagcatgttttgctaggaccatgttttgttgccttgtcatagatgatggatgaaaactgttctagttttgcttaagcagGAACCCCTTGCTTTCGAGGATATGGTAGGCGTAATGGAGAGAGGAGGAGGAAGGCTGTACGTGGGTGCATTGTCAGCCAGGACCTTTCTGTTCTGAACTT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17401349|gb|BM178131.1|BM178131
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTTTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298193160|gb|HO033594.1|HO033594
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298181810|gb|HO025985.1|HO025985
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|19345970|gb|BM890850.1|BM890850
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298199594|gb|HO043471.1|HO043471
EST:     GAAGCAGGGGGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|151395180|gb|EV265051.1|EV265051
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGACGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|254321711|gb|GR825028.1|GR825028
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193637975|gb|FK585791.1|FK585791
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGG
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGG
EST: gi|13181264|gb|BG352613.1|BG352613
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|151400718|gb|EV270532.1|EV270532
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGGAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|10710672|gb|BF010390.1|BF010390
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|192329630|gb|FK021916.1|FK021916
EST:     TCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: TCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193556447|gb|FK511096.1|FK511096
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCTGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193390793|gb|FK355523.1|FK355523
EST:     TCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGTCGCAATGGAGAGCGTAGAAGG
genomic: TCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGG-CGCAATGGAGAGCGTAGAAGG
EST: gi|298187081|gb|HO034230.1|HO034230
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|13789946|gb|BG652537.1|BG652537
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|208216516|gb|GE013400.1|GE013400
EST:     AAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: AAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|254327971|gb|GR834936.1|GR834936
EST:     GAAGCAGGGAGTGTTGA-CCCTGGTCGTGTTCGACTC-TGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|209707806|gb|BW683702.1|BW683702
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|208300491|gb|GE100256.1|GE100256
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|151401801|gb|EV271614.1|EV271614
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298167226|gb|HO010665.1|HO010665
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGG
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGG
EST: gi|209718263|gb|BW677487.1|BW677487
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193474033|gb|FK443264.1|FK443264
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|16997182|gb|BM086554.1|BM086554
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|208102096|gb|GD899077.1|GD899077
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|254346474|gb|GR856196.1|GR856196
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|6726918|gb|AW311198.1|AW311198
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|193548205|gb|FK504862.1|FK504862
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298172238|gb|HO021830.1|HO021830
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAGTGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|192322367|gb|FK014608.1|FK014608
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298186880|gb|HO033979.1|HO033979
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298182877|gb|HO031612.1|HO031612
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298180288|gb|HO025489.1|HO025489
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298176490|gb|HO026725.1|HO026725
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|151409894|gb|EV279702.1|EV279702
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGGGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|22523471|gb|BU082282.1|BU082282
EST:     GAAGCTTGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|254327970|gb|GR834935.1|GR834935
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298187656|gb|HO034805.1|HO034805
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|192294910|gb|FG985928.1|FG985928
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAACGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|192329629|gb|FK021915.1|FK021915
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|254346475|gb|GR856197.1|GR856197
EST:     GAAGCAGGGAGTGTTGA-CCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|209697660|gb|BW655509.1|BW655509
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|31472781|gb|CD414809.1|CD414809
EST:     AGGGAGTGTTGACCCTTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: AGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|207758440|gb|GD729774.1|GD729774
EST:     CGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: CGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298171153|gb|HO016185.1|HO016185
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|298168655|gb|HO009585.1|HO009585
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
EST: gi|18040373|gb|BM308667.1|BM308667
EST:     GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAG                         GAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA
genomic: GAAGCAGGGAGTGTTGACCCCTGGTCGTGTTCGACTCTTGCTCCATAGAGgtaggattgt ... atttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attctcatagccatgcttgtttgcagtcttgttaatcttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAATCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT
                             tgttaat  putative branch site (score: 3)
                                   tcttttttgcattt  CT-rich tract
                            ttgttaatctttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
atatgcaatgacctttagctttcactagaaacctatttatgcaagattctcatagccatgcttgtttgcagtcttgttaatcttttttgcatttgagcagGAACTCCTTGTTTCCGTGGATATGGAAGGCGCAATGGAGAGCGTAGAAGGAAATCTGTTCGTGGGTGCATTGTCAGCCCAGACCTCTCTGTTTTGAACTT

- - -caatgac
- - - - - - - - - ctttcac
- - - - - - - - - - - - - - - - - - - -tgcaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcagtc