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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactaactgcaccaccaaaaatctataaaggttttctgttaatttgttgtaagtttgggtttttagctgagctacttatcaaacaattctcaattttgtttccacttttcagtgttgagtgataaactttagggggttcgactcttattgaagtttttgttgatactttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATTCGTTATGTGCAAGGCATGAACGAGGTCTTGGCACCAATATACTATGTAT

Basic information

species Glycine max
transcript GLYMA13G23560.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G23560.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv11s0016g05350.t01 (Vitis vinifera), 3'ss of exon 5
gtaactaactgcaccaccaaaaatcta-taaaggttttctgttaatttgttgtaagtttgggtttttagctgagctacttat-caaacaattc-tcaattttgtttccacttttcagtgttgagtgataaactttagggggttcgactcttattgaagtttttgt----tgatac---tttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATTCGTTATGTGCAAGGCATGAACGAGGTCTTGGCACCAATATACTATGTAT
                      ||| | |  | ||||||| ||   |    ||||  |||   | | | |   |     ||| ||  |||||| ||| ||   |    | |    | | |||||  |||||        |  | || ||||| ||||    ||||    || | |   | |||||| ||||||| ||||  | ||| |||||||| ||||| ||  |||||||||  || |||||||||||||||||||| || || |||||||||||||||||| |||
--------------------gtatcgactttaagttttctatttgctaa--gtaatgttgttatctaaaccagggattctatacatccaattcatcatttccatggtaaatcccaaatattgag--ataaatgaataatgaatagattcttactgaacgcattgtaatatgctgcatttctaactacagGAAGCAATGAGAAGTATTCTTCTCCTGTTTGCTAAACTAAATCCTGCAATCCGTTATGTGCAAGGCATGAATGAAGTATTGGCACCAATATACTATATAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208185655|gb|GD986298.1|GD986298
EST:     GGGGAGTCATCAATTAGTTGCAAAAATAGG                         GAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
genomic: GGGGAGTCATCAATTAGTTGCAAAAATAGGgtaactaact ... ttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
EST: gi|208106877|gb|GD902382.1|GD902382
EST:     GGGGAGTCATCAATTAGTTGCAAAAATAGG                         GAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
genomic: GGGGAGTCATCAATTAGTTGCAAAAATAGGgtaactaact ... ttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
EST: gi|208122096|gb|GD919021.1|GD919021
EST:     GGGGAGTCATCAATTAGTTGCAAAAATAGG                         GAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
genomic: GGGGAGTCATCAATTAGTTGCAAAAATAGGgtaactaact ... ttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
EST: gi|193545261|gb|FK499484.1|FK499484
EST:     GGGGAGTCGTCAATTAGTTGCAAAAATAGG                         GAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT
genomic: GGGGAGTCATCAATTAGTTGCAAAAATAGGgtaactaact ... ttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaactttagggggttcgactcttattgaagtttttgttgatactttaactatagGAAGCGATGAAGAATATCCTTCTCCTTTTTGCAAAGTTAAATCCTGAGATTCGTTATGTGCAAGGCATGAACGAGGTCTTGGCACCAATATACTATGTAT
                                           ctttaac  putative branch site (score: 3)
                      ttattgaagttttt  TA-rich tract