Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcatccaaaaccttatttatgtttctgagtcttatttttaacagttctttttgcttgcaaatatggaatattgtgtatctgagtctatgatgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAAAGCAGAAGTTGCAGCTAAGTCCCAAAAATCACAAGGGAAAGGAAGTATT

Basic information

species Glycine max
transcript GLYMA13G21520.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G21520.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0074g00140.t01 (Vitis vinifera), 3'ss of exon 4
tcatccaaaaccttatttatgtttctgagtcttatttttaacagttctttttgcttgcaaatatgg-------aatattgtgtatctgagtctatgatgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAAAGCAGAAGTTGCAGCTAAGTCCCAAAAATCACAAGGGAAAGGAAGTATT
       || |  | ||  ||   |     |  |    | |     || ||||  ||  |||| |        |||  | | |     ||    | ||    ||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||||    || ||  | || || || ||  | || || | |   
-------aagctctgttactgcaacaagaaccaaccgcttagccccctgtttgagtggtaataggtttcttttaattctatcttctgaagagccttataatgtgcagTGAAATTAAGGAGAGGGTCAAGAAAACCAAGGATGAGAAGAAAGCAAAGAAAGCAGAAGTGATGGCCAAAACTCAGAAGTCTCAGAGCAAGGGTAATGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23057424|gb|BU578098.1|BU578098
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|209720831|gb|BW659525.1|BW659525
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|151411427|gb|EV281238.1|EV281238
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|13790867|gb|BG653458.1|BG653458
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|209715514|gb|BW682180.1|BW682180
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|33388019|gb|CA851226.1|CA851226
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTACG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|120529878|gb|EH258012.1|EH258012
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|19053213|gb|BM731880.1|BM731880
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|192329410|gb|FK023628.1|FK023628
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|254316158|gb|GR825967.1|GR825967
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|209723193|gb|BW675139.1|BW675139
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|13787312|gb|BG649904.1|BG649904
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|120531053|gb|EH259186.1|EH259186
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|9203781|gb|BE330005.1|BE330005
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|214004056|gb|DB984962.1|DB984962
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|213618473|gb|DB967710.1|DB967710
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|4397362|gb|AI496359.1|AI496359
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|298185626|gb|HO030839.1|HO030839
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACGAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|254341112|gb|GR854840.1|GR854840
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|17021663|gb|BM092697.1|BM092697
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|57575853|gb|CX548824.1|CX548824
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGCCAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|6725370|gb|AW309769.1|AW309769
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|22932392|gb|BU549531.1|BU549531
EST:     GCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: GCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|15812652|gb|BI784927.1|BI784927
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|209722711|gb|BW657965.1|BW657965
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|213619695|gb|DB967317.1|DB967317
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|209705938|gb|BW661755.1|BW661755
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|151398218|gb|EV268096.1|EV268096
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|13791631|gb|BG654222.1|BG654222
EST:     GCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: GCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|6566752|gb|AW234384.1|AW234384
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|7145806|gb|AW507728.1|AW507728
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|192306402|gb|FG997156.1|FG997156
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|192325754|gb|FK017976.1|FK017976
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|31456728|gb|CD398756.1|CD398756
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|31476383|gb|CD418411.1|CD418411
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|163926101|gb|EH038392.1|EH038392
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|57574256|gb|CX547231.1|CX547231
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|214005582|gb|DB984590.1|DB984590
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|57574098|gb|CX547073.1|CX547073
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|18040154|gb|BM308448.1|BM308448
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|214005034|gb|DB985658.1|DB985658
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|213599777|gb|DB968427.1|DB968427
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|7284415|gb|AW597007.1|AW597007
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|208228186|gb|GE027386.1|GE027386
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|33388095|gb|CA851302.1|CA851302
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|208198211|gb|GD996828.1|GD996828
EST:     AGATGCAGTCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGATGCAG-CTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|209715513|gb|BW682179.1|BW682179
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|17518736|gb|BM187778.1|BM187778
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|4396821|gb|AI495818.1|AI495818
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAAGAG-ATCAAGAAAACTAAGGATGACAAGAAAGCTAAGA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGA-GAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGA
EST: gi|5606228|gb|AI900326.1|AI900326
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|151397032|gb|EV266905.1|EV266905
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTATGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|12496182|gb|BG046936.1|BG046936
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|209702723|gb|BW652766.1|BW652766
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|58022509|gb|CX709250.1|CX709250
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|7041987|gb|AW471881.1|AW471881
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|58025291|gb|CX712032.1|CX712032
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|10848042|gb|BF070603.1|BF070603
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|213601842|gb|DB982567.1|DB982567
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|31473123|gb|CD415151.1|CD415151
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|192307537|gb|FK000823.1|FK000823
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|4313982|gb|AI461101.1|AI461101
EST:     AAACCGAGAANGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AA-CCGAGAA-GCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|298164889|gb|HO010886.1|HO010886
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|19054246|gb|BM732913.1|BM732913
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGATATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|192298391|gb|FG989142.1|FG989142
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|6482694|gb|AW201931.1|AW201931
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTGG                         TGAAATTAAGGAGAGGATCAAGACAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|16347827|gb|BI973422.1|BI973422
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|208222634|gb|GE017411.1|GE017411
EST:     AGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|15664207|gb|BI701578.1|BI701578
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|213607190|gb|DB965104.1|DB965104
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|58022219|gb|CX708960.1|CX708960
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|209720832|gb|BW659526.1|BW659526
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|298165579|gb|HO011628.1|HO011628
EST:     AGAACCGAGAAGCCAGAAGTCCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGGAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|20814420|gb|BQ298898.1|BQ298898
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|193699212|gb|FK637637.1|FK637637
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAANCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAA
EST: gi|209705937|gb|BW661754.1|BW661754
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|10846233|gb|BF069176.1|BF069176
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
EST: gi|208269379|gb|GE066089.1|GE066089
EST:     AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCG                         TGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA
genomic: AGAACCGAGAAGCCAGAAGTTCGAGATGCAGCTAGGGAAGCACAGCTTCGgtgtgttttt ... tgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttgcttgcaaatatggaatattgtgtatctgagtctatgatgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAAAGCAGAAGTTGCAGCTAAGTCCCAAAAATCACAAGGGAAAGGAAGTATT
             aaatatggaatatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcatccaaaaccttatttatgtttctgagtcttatttttaacagttctttttgcttgcaaatatggaatattgtgtatctgagtctatgatgtgatgcagTGAAATTAAGGAGAGGATCAAGAAAACTAAGGATGACAAGAAAGCTAAGAAAGCAGAAGTTGCAGCTAAGTCCCAAAAATCACAAGGGAAAGGAAGTATT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAA
- - -caaaacc
- - - - - - - - - - gtttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtctatg