1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tggtcaatatattatctttcaaagtgatttacttctgttcctactttctttaaaacattgacctaaataagtactgttttcttgaacttgaatataccagCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTT
species | Glycine max |
transcript | GLYMA13G21370.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATACCAAGTTGG CATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAAEST: gi|51337898|gb|CO981764.1|CO981764
genomic: ATACCAAGTTGGgtagggttaa ... aatataccagCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAA
EST: GCATGGGTAAATGCGACAGGTTTAGAAAGATGTACTGCATACCAAGTTGG CATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAAEST: gi|207840654|gb|GD811855.1|GD811855
genomic: GCATGGGTAAATGCGACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGgtagggttaa ... aatataccagCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAA
EST: ACAGGTTTAGAAAGATGTACTGCGTACCAAGTTGG CATGATGGCAACTGTGATGAATTCAATATTGCTCCAATCGACTCTAGAGAA
genomic: ACAGGTTTAGAAAGATGTACTGCATACCAAGTTGGgtagggttaa ... aatataccagCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAA
ttctttaaaacattgacctaaataagtactgttttcttgaacttgaatataccagCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTT
acctaaa putative branch site (score: 3)
taaataagta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggtcaatatattatctttcaaagtgatttacttctgttcctactttctttaaaacattgacctaaataagtactgttttcttgaacttgaatataccagCATGATGGCCACTGTGATGAATTCAATATTGCTCCAATCTACTCTAGAGAAGATGGGTGTTCAGACTCGTGTACAAACTTCAGTTGCCATGCAGGAGTTT
- - - - - - - - - - - - - - - acttctg
- - - - - - - - - - - - - - - - - - - - - - - - - -aaaacatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgaac