1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcgaaaattcatgatttgagactgtcaacattaattcttttaagcaaccaacacaagtttttactttttgggaaaagtcacttataaactttttgtctttaatctttgtttgctattttgcagAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGATAAGACAG
species | Glycine max |
transcript | GLYMA13G21310.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAG AGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGATEST: gi|192317082|gb|FK007849.1|FK007849
genomic: GGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAGgtcgaaaatt ... tattttgcagAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGAT
EST: GGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAG AGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGATEST: gi|151406326|gb|EV276141.1|EV276141
genomic: GGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAGgtcgaaaatt ... tattttgcagAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGAT
EST: GGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAG AGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTEST: gi|192317081|gb|FK007848.1|FK007848
genomic: GGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAGgtcgaaaatt ... tattttgcagAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCT
EST: GGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAG AGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGATEST: gi|193460783|gb|FK427552.1|FK427552
genomic: GGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAGgtcgaaaatt ... tattttgcagAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGAT
EST: GGTCTCTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAG AGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGAT
genomic: GGTCTTTCTTCAAAGGAATCGAGATGTGGAGGGAAGAGACCATTTTCAAGgtcgaaaatt ... tattttgcagAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGAT
tgggaaaagtcacttataaactttttgtctttaatctttgtttgctattttgcagAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGATAAGACAG
ctttaat putative branch site (score: 4)
ctatttt putative PPT
ttataaactttttgtc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgaaaattcatgatttgagactgtcaacattaattcttttaagcaaccaacacaagtttttactttttgggaaaagtcacttataaactttttgtctttaatctttgtttgctattttgcagAGAGAAAAGACCATGCAGCGAGCGACTTTGGTTGATTCTCAGGGTGAAGATAAGACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA