1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...cacaagctttagatttttggtgcaatagactttaagagcatatatttctcctaatttccagttgaataatttctttaatagtttatttgtctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGTTGGGATGTCTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGG
species | Glycine max |
transcript | GLYMA13G20970.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGEST: gi|298176712|gb|HO026833.1|HO026833
genomic: CAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
EST: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGEST: gi|15201651|gb|BI424985.1|BI424985
genomic: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
EST: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGEST: gi|192303747|gb|FG998673.1|FG998673
genomic: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
EST: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGEST: gi|192303748|gb|FG998674.1|FG998674
genomic: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
EST: GATGCTAGTTGGAAATAAAGTTGATAGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGEST: gi|13563363|gb|BG551583.1|BG551583
genomic: GATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
EST: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTEST: gi|58018762|gb|CX705504.1|CX705504
genomic: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTT
EST: CAACTAATCAGAATTGCGTGAAGATGTTAGTTGGAAATAAAGTTGATAGA GATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
genomic: CAACTAATCAGAATTGCGTGAAGATGCTAGTTGGAAATAAAGTTGATAGAgtaagttgtg ... ctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAG
ttctcctaatttccagttgaataatttctttaatagtttatttgtctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGTTGGGATGTCTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGG
tctattctt CT-rich tract
aataatttctttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cacaagctttagatttttggtgcaatagactttaagagcatatatttctcctaatttccagttgaataatttctttaatagtttatttgtctattcttagGATTCTGAAAGGGTTGTGAGCAAAGAAGAGGGTTTAGCACTTGCCGAGGAGTTGGGATGTCTGTTTTTTGAATGTAGTGCCAAAACTCGAGAAAATGTGG
cacaagc
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