1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccatcattttataacaaagttttcttgaaggttgagactaatttaataattttagcatttacagttaccttttaaattcatgaatgatcctattttgcagAAAAGAGCTACCCACCTGTTGCTGAACAGTGTGCTTGGGCGCTGGGAAATGTGGCTGGTGAAGGTGAAGAGTTGAGGAATGTTCTGCTAGTTCAAGGGGC
species | Glycine max |
transcript | GLYMA13G20090.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AACAAAAGCTTTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGG AAAAGAGCTACCCACCTGTTGCTGAACAGTGTGCTTGGGCGCTGGGAAATGEST: gi|151397313|gb|EV267186.1|EV267186
genomic: AACAAAAGCTTTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGGgtgagtgatc ... tattttgcagAAAAGAGCTACCCACCTGTTGCTGAACAGTGTGCTTGGGCGCTGGGAAATG
EST: AACAAAAGCTTTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGG AAAAGAGCTACCCACCTGTTGCTGAACAGTGTGCTTGGGCGCTGGGAAATG
genomic: AACAAAAGCTTTGTTGCCTGCATTGCCCTTGCTTATTGCTCATCTTGGGGgtgagtgatc ... tattttgcagAAAAGAGCTACCCACCTGTTGCTGAACAGTGTGCTTGGGCGCTGGGAAATG
ataattttagcatttacagttaccttttaaattcatgaatgatcctattttgcagAAAAGAGCTACCCACCTGTTGCTGAACAGTGTGCTTGGGCGCTGGGAAATGTGGCTGGTGAAGGTGAAGAGTTGAGGAATGTTCTGCTAGTTCAAGGGGC
atttaat putative branch site (score: 4)
tcctatttt putative PPT
ttttaaattcatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatcattttataacaaagttttcttgaaggttgagactaatttaataattttagcatttacagttaccttttaaattcatgaatgatcctattttgcagAAAAGAGCTACCCACCTGTTGCTGAACAGTGTGCTTGGGCGCTGGGAAATGTGGCTGGTGAAGGTGAAGAGTTGAGGAATGTTCTGCTAGTTCAAGGGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
ccatcat
- - - - - - - - - - - - - - -ggttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaat