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...agttctgctaaaataatctatggagggagtagaagacagagttgcattatggtttgagaaccatgataaaaactttgtttttttttttctttccttttagGTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAG
species | Glycine max |
transcript | GLYMA13G19730.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTGGAATGCAAGAATTGTAATTTCAGACGTTGATGGAACTATTACAAA GTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAEST: gi|13479791|gb|BG509134.1|BG509134
genomic: AAGTGGAATGCAAGAATTGTAATTTCAGACGTTGATGGAACTATTACCAAgtaaggctac ... ttccttttagGTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACA
EST: AAGTGGAATGCAAGAATTGTAATTTCAGACGTTGATGGAACTATTACCAA GTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAEST: gi|21994257|gb|BQ785785.1|BQ785785
genomic: AAGTGGAATGCAAGAATTGTAATTTCAGACGTTGATGGAACTATTACCAAgtaaggctac ... ttccttttagGTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACA
EST: CAAGAATTGTAATTTCAGACGTTGATGGAACTATTACCAA GTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACA
genomic: CAAGAATTGTAATTTCAGACGTTGATGGAACTATTACCAAgtaaggctac ... ttccttttagGTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACA
attatggtttgagaaccatgataaaaactttgtttttttttttctttccttttagGTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAG
ctttgttttttttttt CT-rich tract
ataaaaactttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttctgctaaaataatctatggagggagtagaagacagagttgcattatggtttgagaaccatgataaaaactttgtttttttttttctttccttttagGTCTGATGTTTTGGGGCAGTTCATGCCTTTAGTTGGCAAAGATTGGACACAATCTGGAGTGGCAAGGCTTTTCTGTGCTATTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- ttctgct
- - - - -aaaataa
- - - - - - - - - - tggaggg
- - - - - - - - - - - - - - - - - - - - - tgcatta
- - - - - - - - - - - - - - - - - - - - - - - - -tggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgat