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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatttctcctgctaacaaaaactaacaaattaacaattaacatttttttcatcaagaaaaaaaaaacaatggtgattactctttttttctaatgaatcatcccattatgagcattgcagGTTCAATGTCTTGGGTATGCATGAATTTGACAGTGACAGGAAGAGAATGTCAGTTATATTGGGGTACCCTGACAATTCAGTGAAAGTTTTTGTCAAAGGA

Basic information

species Glycine max
transcript GLYMA13G18580.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G18580.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv13s0047g01210.t01 (Vitis vinifera), 3'ss of exon 2
gtgatttctcctgctaacaaaaactaacaa--attaacaattaacatttttttcatcaagaaaaaaaaaacaatggtgattactctttttttctaatgaatcatcccattatgagcattgcagGTTCAATGTCTTGGGTATGCATGAATTTGACAGTGACAGGAAGAGAATGTCAGTTATATTGGGGTACCCTGACAATTCAGTGAAAGTTTTTGTCAAAGGA
| ||| | | || || | | | || || | ||| | | || | || | | ||||||||| ||||| || ||| |||||||| |||| |||||| ||||||| ||||| |||||| | || || ||||||||||||||||||| ||||||||| | |||||||||||||| |||||
----------------agaaacatttttaattgtttttattaagaatgaactttgttc--aaatacgggcccatcctatttcttttctttttctaacttgtcatc-----attggcagtgcagGTTTGATGTTTTGGGTTTGCATGAGTTTGATAGTGACCGTAAAAGGATGTCAGTTATATTGGGGTGCCCTGACAACACTGTGAAAGTTTTTGTAAAAGGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacaatggtgattactctttttttctaatgaatcatcccattatgagcattgcagGTTCAATGTCTTGGGTATGCATGAATTTGACAGTGACAGGAAGAGAATGTCAGTTATATTGGGGTACCCTGACAATTCAGTGAAAGTTTTTGTCAAAGGA
                      ttctaat  putative branch site (score: 2)
 tttttttctaatgaat  TA-rich tract