1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...agacagaatgcacaacgactgttgtactttgctcgtatattttactagatggcaatagtgcatcattccgctccttactttttgaggcaacattatgcagGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCTGCTCATGAAAATGACATTGAA
species | Glycine max |
transcript | GLYMA13G17370.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAAC GATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTEST: gi|193427054|gb|FK397515.1|FK397515
genomic: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACgtaagttctt ... cattatgcagGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGT
EST: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAAC GATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTEST: gi|193346230|gb|FK309722.1|FK309722
genomic: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACgtaagttctt ... cattatgcagGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGT
EST: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAAC GATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTEST: gi|14125826|gb|BG790264.1|BG790264
genomic: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACgtaagttctt ... cattatgcagGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGT
EST: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAAC GATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTEST: gi|254329165|gb|GR833537.1|GR833537
genomic: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACgtaagttctt ... cattatgcagGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGT
EST: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAAC GATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTEST: gi|298165268|gb|HO011317.1|HO011317
genomic: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACgtaagttctt ... cattatgcagGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGT
EST: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAAC GATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGT
genomic: ACAATGACTACTAACAACACTACTGAGGAAGGAAGTGAACAAGAACAAACgtaagttctt ... cattatgcagGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGT
tagatggcaatagtgcatcattccgctccttactttttgaggcaacattatgcagGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCTGCTCATGAAAATGACATTGAA
tccttac putative branch site (score: 2)
ttacttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agacagaatgcacaacgactgttgtactttgctcgtatattttactagatggcaatagtgcatcattccgctccttactttttgaggcaacattatgcagGATATCTGTAACTTTTATTGATAAGGATGGTGAGGAGAAGCATATCAAAGTCCCTGTTGGAATGTCTATGTTAGAAGCTGCTCATGAAAATGACATTGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT