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gtatgtggaatcctaattttgagttatggtacaacttttattaatttaatattttaacacacaccacattgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAG
species | Glycine max |
transcript | GLYMA13G17200.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATAT TTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAEST: gi|193545482|gb|FK503989.1|FK503989
genomic: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATgtatgtggaa ... ttgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGA
EST: GACCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATAT TTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAEST: gi|13252197|gb|BG363100.1|BG363100
genomic: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATgtatgtggaa ... ttgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGA
EST: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATAT TTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAEST: gi|13789938|gb|BG652529.1|BG652529
genomic: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATgtatgtggaa ... ttgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGA
EST: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATAT TTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAEST: gi|19348273|gb|BM892805.1|BM892805
genomic: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATgtatgtggaa ... ttgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGA
EST: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATAT TTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAEST: gi|193355897|gb|FK319124.1|FK319124
genomic: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATgtatgtggaa ... ttgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGA
EST: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATAT TTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAEST: gi|42723064|gb|CK768963.1|CK768963
genomic: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATgtatgtggaa ... ttgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGA
EST: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATAT TTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGA
genomic: GATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATgtatgtggaa ... ttgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGA
ttatggtacaacttttattaatttaatattttaacacacaccacattgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAG
ttttaac putative branch site (score: 2)
tacaacttttattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtggaatcctaattttgagttatggtacaacttttattaatttaatattttaacacacaccacattgtctgcagTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT