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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggtcctaaagtagttagacgttcttgaatcatatattaaagttgcttctatcatacttcgttatttattgtagGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTGAAGGATCTCAACACCCACCAGTTACAAGCATTT

Basic information

species Glycine max
transcript GLYMA13G15140.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G15140.2 (Glycine max), 3'ss of exon 4
lower sequence: Vv06s0009g01080.t01 (Vitis vinifera), 3'ss of exon 4
-------gtatggtcctaaagtagttagacgttcttgaat-catatattaaagttg---cttctatcatacttcgttatttat--------tgtagGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTGAAGGATCTCAACACCCACCAGTTACAAGCATTT
       ||  || | |      | || |  |  || | | |||  |||   | ||    |  |   | | |    || | ||        || ||||| |||||  |||| || |||  |||||||||||| ||||| ||||||||||| ||||||||||||  ||||||  |  ||||||| || |||||||| 
gtgaggagttaggccttttctatgataaagatagttaatttcatgcatttctggtgggtttcttgataaaatatactaataatgaataccatgcagGGAAGTTGTGACTGAGTTAAAGAAAGCTGGTGCTACCTGGATACAGTTTGATGAGCCTACCCTTGTGTTGGATCTTGATTCCCACCACTTGCAAGCATTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208150434|gb|GD946965.1|GD946965
EST:     AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAG                         GGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
genomic: AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtcct ... tttattgtagGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
EST: gi|208160573|gb|GD964679.1|GD964679
EST:     AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAG                         GGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA
genomic: AAGTCATTTTCCCTTCTTTCCCTAATTGACAAGATCCTTCCTGTCTACAGgtatggtcct ... tttattgtagGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttcttgaatcatatattaaagttgcttctatcatacttcgttatttattgtagGGAGGTTGTTGCTGAATTGAAGGCAGCTGGTGCTACTTGGATCCAGTTTGATGAACCTACCCTTGTGAAGGATCTCAACACCCACCAGTTACAAGCATTT
     ttgaatcatatattaa  TA-rich tract