1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ttatggctaaattagaatacatgttcttatgcactcatcttcctaaaataggaaattggcaatactcttaaggggctaaaatcaggttttcatgttgcagATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACG
species | Glycine max |
transcript | GLYMA13G11710.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ACCAGTACTTCAGGGAAAGCAAATTT ATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTTEST: gi|207709537|gb|GD690109.1|GD690109
genomic: ACCAGTACTTCAGGGAAAGCAAATTTgtaagttcat ... catgttgcagATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTT
EST: GACAAGATGTGTGGAAAGAATTTTACCAGTATTTCAGGGAAAGCAAATTT ATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTTEST: gi|10238065|gb|BE806953.1|BE806953
genomic: GACAAGATGTGTGGAAAGAATTTTACCAGTACTTCAGGGAAAGCAAATTTgtaagttcat ... catgttgcagATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTT
EST: GACAAGATGTGTGGAAAGAATTTTACCAGTACTTCAGGGAAAGCAAATTT ATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTG
genomic: GACAAGATGTGTGGAAAGAATTTTACCAGTACTTCAGGGAAAGCAAATTTgtaagttcat ... catgttgcagATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTT
aaataggaaattggcaatactcttaaggggctaaaatcaggttttcatgttgcagATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACG
ttttcat CT-rich tract
taaaatca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatggctaaattagaatacatgttcttatgcactcatcttcctaaaataggaaattggcaatactcttaaggggctaaaatcaggttttcatgttgcagATCCATATTACGTCCATTGATTTTATTATACTTTCCACATTTGCACCGTTTTGGGTTTACAACGATATGACTGCTCGAAAACG
- - - - - - - - - -catgttc
- - - - - - - - - - - - - -tatgcac
- - - - - - - - - - - - - - - - - -catcttc