Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatttaacttcgaagatttttaattatagtttcacaatgttcattaaagatatgcatgcagcttatattttttttggcttggtttctgatcttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT

Basic information

species Glycine max
transcript GLYMA13G10130.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G10130.1 (Glycine max), 3'ss of exon 4
lower sequence: LOC_Os06g43570.1 (Oryza sativa), 3'ss of exon 6
--gatttaacttcgaagatttttaattatagtttcacaatgttcattaaagatatgcatgcagcttatattttttttggcttggtttctgatcttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT
   | |  | |   |   | ||  ||| || | |    || |  |  |    | || |||      || ||   |         ||  |  |||||||| ||||||| || ||| | |||||||| ||||| ||||| ||||  ||||| || |||||||||||  | ||||| ||||||||   |||     ||||
tataatatattataattctgttgcattgtactgtttagatttctaccactattttgaatg--atagatgttacatgacaacatattatttttcttgacaaagGAACCTGAAGAACTCTTTGAGACTATCTCACAAGCTCTGCAGTCATCAGTTGATCGTGATTGCCTCAGTGGTTGGGGAGGCTTTGTTCTGCTTGT

upper sequence: GLYMA13G10130.1 (Glycine max), 3'ss of exon 4
lower sequence: AT1G21720.1 (Arabidopsis thaliana), 3'ss of exon 5
---------gatttaact-tcgaagatttttaattatagtttcacaatgtt-cattaaagatatgcatgcagcttatattttttttggcttggtttctgatcttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT
           |||||   ||  || || |||   |||  | ||   |  | |  || |  |||| ||  ||           | ||||||      |||   |    |||||| | ||||||||||| ||||| || || |||||||| || |||||||| || ||||||||| ||||||| |||||||| ||||| ||  ||||
ggcatgaggtgtttaatagtctgagcttgttagccata-ctccattgtactactctagacttatgtatcgagac---------tctggcttaacacatgaggatt-ttcagGAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCATCTGTTGACCGTGATTGTCTGAGTGGTTGGGGAGGGCATGTTTACATTGT

upper sequence: GLYMA13G10130.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 3'ss of exon 5
---gatttaacttcgaagatttttaattatagtttcacaatgttcattaaagatatgcatgcagcttatattttttttggcttggtttctgatcttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT
   |   |||  |  |  ||  |   || ||||        ||||    | |  | ||     |  |    |   ||     |   || | |   | |  |||||||| |||||||| ||||||| |||||| ||||||||||| ||||| ||||||||||| || |||||||| |||||||||||||||||||||||
attgtgctaagatacagcatgctccctt-tagtcatctttcgttc--ccatgtcaagctaatgggatcagctgcattgactctttattttaactattattcagGAACCTGAGGAATTATTTGAGATCATCTCTCAAGCACTGCTCTCATCAGTAGATCGTGACTGCTTGAGTGGTTGGGGAGGACATGTCTATGTTGT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023417|gb|CX710158.1|CX710158
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|193727650|gb|FK664490.1|FK664490
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|31456196|gb|CD398224.1|CD398224
EST:     GTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: GTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|298178487|gb|HO024222.1|HO024222
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGGCATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCGCTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|14009264|gb|BG725868.1|BG725868
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|208227655|gb|GE022851.1|GE022851
EST:     GTGCTTGTGAGGTCGATGTTTAAGCTTGACATG                         GAACCAGAGGAA-TGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: GTGCTTGTGAGG-CGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|213616908|gb|DB978898.1|DB978898
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|254322957|gb|GR835672.1|GR835672
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|26047843|gb|CA784499.1|CA784499
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|192295475|gb|FG987089.1|FG987089
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCCCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|58023718|gb|CX710459.1|CX710459
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|193586031|gb|FK539919.1|FK539919
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|298198213|gb|HO039752.1|HO039752
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|23732782|gb|BU764563.1|BU764563
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|192298335|gb|FG992110.1|FG992110
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|192319626|gb|FK013710.1|FK013710
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|209717219|gb|BW657688.1|BW657688
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|254322956|gb|GR835671.1|GR835671
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|209721449|gb|BW671657.1|BW671657
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCCAGAG-AATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGT
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACC-AGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGT
EST: gi|298164572|gb|HO014217.1|HO014217
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTG
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTG
EST: gi|192325391|gb|FK018362.1|FK018362
EST:     CATCTGAGTCTCCGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCCAAGCACTGCTATCATCTGT
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCC-AAGCACTGCTATCATCTGT
EST: gi|7588683|gb|AW704473.1|AW704473
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTAAAGCCTGACATG                         GAACCAGATGAATTGTTTGAGACCATCTTCTAAGCACTGCTATCATCTGTT
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|208180380|gb|GD975835.1|GD975835
EST:     GTGCTTGTGAGGCGATGTTTAAGCTTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: GTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|22933839|gb|BU550978.1|BU550978
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|151393124|gb|EV262999.1|EV262999
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|192331428|gb|FK023391.1|FK023391
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|209717218|gb|BW657687.1|BW657687
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|120533789|gb|EH261922.1|EH261922
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|192298336|gb|FG992111.1|FG992111
EST:     CATTTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|193694577|gb|FK627733.1|FK627733
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|57574580|gb|CX547555.1|CX547555
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|7588884|gb|AW704670.1|AW704670
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTACCAAGCACTGCTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTA
EST: gi|207736606|gb|GD710315.1|GD710315
EST:     GTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: GTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|58019721|gb|CX706463.1|CX706463
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|298163713|gb|HO012446.1|HO012446
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|213613997|gb|DB960962.1|DB960962
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|193718168|gb|FK652976.1|FK652976
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|10238976|gb|BE807864.1|BE807864
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGANGAATTGTTTGAGACCATCTCCCCAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|192297363|gb|FG990669.1|FG990669
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|207766114|gb|GD735559.1|GD735559
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|208303140|gb|GE101409.1|GE101409
EST:     CATCTGAGTCTCCGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCGCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|6847346|gb|AW349636.1|AW349636
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|17400469|gb|BM177251.1|BM177251
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGANGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|254330596|gb|GR841861.1|GR841861
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|192331458|gb|FK023392.1|FK023392
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|298172643|gb|HO019683.1|HO019683
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGGGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|208143254|gb|GD942860.1|GD942860
EST:     TATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: TATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|12772181|gb|BG237108.1|BG237108
EST:     TTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: TTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|7684912|gb|AW755560.1|AW755560
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|254344206|gb|GR855291.1|GR855291
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
EST: gi|31309035|gb|CD394238.1|CD394238
EST:     CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATG                         GAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA
genomic: CATCTGAGTCTCTGTATGGTGCTTGTGAGGCGATGTTTAAGCCTGACATGgttggtccca ... cttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagatatgcatgcagcttatattttttttggcttggtttctgatcttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT
                                            tcttgac  putative branch site (score: 3)
              agcttatatttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatttaacttcgaagatttttaattatagtttcacaatgttcattaaagatatgcatgcagcttatattttttttggcttggtttctgatcttgacacagGAACCAGAGGAATTGTTTGAGACCATCTCCCAAGCACTGCTATCATCTGTAGATCGTGATTGTTTGAGTGGCTGGGGAGGACATGTCTATGTTGT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - caatgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtttctg