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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...accacactgtcatgagctgatttttttttttactaagaaagctttgtgacacttgcttttagttattgatttcctctttcttctatatttaatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTTCCTATAG

Basic information

species Glycine max
transcript GLYMA13G04940.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298189073|gb|HO037476.1|HO037476
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|192303526|gb|FG995932.1|FG995932
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|298195533|gb|HO043924.1|HO043924
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATT
EST: gi|298175821|gb|HO018418.1|HO018418
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|192298241|gb|FG991717.1|FG991717
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|151411869|gb|EV281680.1|EV281680
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|213603274|gb|DB970395.1|DB970395
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCT
EST: gi|120491083|gb|EH219250.1|EH219250
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|192298016|gb|FG993250.1|FG993250
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCGTGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|151394021|gb|EV263892.1|EV263892
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|254330721|gb|GR841986.1|GR841986
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|23062388|gb|BU578509.1|BU578509
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|151407677|gb|EV277492.1|EV277492
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|192330838|gb|FK021611.1|FK021611
EST:     GTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: GTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|151395404|gb|EV265281.1|EV265281
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|120530553|gb|EH258686.1|EH258686
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
EST: gi|213611820|gb|DB958886.1|DB958886
EST:     TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAG                         GATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT
genomic: TAATGAGTGAAGTCAGAACGAGTTCTGGGATGTTTCTCAACAAGGCACAGgtatgatgaa ... aatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgacacttgcttttagttattgatttcctctttcttctatatttaatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTTCCTATAG
                        tttcctctttcttcta  CT-rich tract
                               tttcttctatatttaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
accacactgtcatgagctgatttttttttttactaagaaagctttgtgacacttgcttttagttattgatttcctctttcttctatatttaatctttaagGATGAAATAGTTGCTGGTATTGAAGCCAGAATTGCTGCATGGACATTCCTTCCTATAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA
-ccacact
- - - - -tcatgag
- - - - - - - - - - - - - - - - - - - - -ctttgtg
- - - - - - - - - - - - - - - - - - - - - - - - -cacttgc