1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tagagagagctgtctcattgccaacatcaagtttcacattgggtctttcattcatcaatgttatacgtttgatgaacaagtcatgaatttgaatttgcagGTTGAGCCGAAGCGGCGGAAGAGATGACCATCATGCTGAATTAACTCATCTTGCGAATGCACCTCTTGCTGAATTTCACGGGCTATGTGGTAGCTGTTGT
species | Glycine max |
transcript | GLYMA12G35680.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATATGATGGCAAG GTTGAGCCGAAGCGGCGGAAGAGATGACCATCATGCTGAATTAACTCATCTEST: gi|6454790|gb|AW185473.1|AW185473
genomic: TGAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATCTGATGGCAAGgtgagactac ... gaatttgcagGTTGAGCCGAAGCGGCGGAAGAGATGACCATCATGCTGAATTAACTCATCT
EST: TGAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATCTGATGGCAAG GTTGAGCCGAAGCGGCGGAAGAGATGACCATCATGCTGAATTAACTCATCTEST: gi|207756499|gb|GD729036.1|GD729036
genomic: TGAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATCTGATGGCAAGgtgagactac ... gaatttgcagGTTGAGCCGAAGCGGCGGAAGAGATGACCATCATGCTGAATTAACTCATCT
EST: TGAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATCTGATGGCAAG GTTGAGCCGAAGCGGCGGAAGAGATGACCATCATGCTGAATTAACTCATCT
genomic: TGAAGAAACCCCAGGCTACATTTCCTGTATCACCAGGATCTGATGGCAAGgtgagactac ... gaatttgcagGTTGAGCCGAAGCGGCGGAAGAGATGACCATCATGCTGAATTAACTCATCT
tttcattcatcaatgttatacgtttgatgaacaagtcatgaatttgaatttgcagGTTGAGCCGAAGCGGCGGAAGAGATGACCATCATGCTGAATTAACTCATCTTGCGAATGCACCTCTTGCTGAATTTCACGGGCTATGTGGTAGCTGTTGT
gtttgat putative branch site (score: 5)
atgaatttgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagagagagctgtctcattgccaacatcaagtttcacattgggtctttcattcatcaatgttatacgtttgatgaacaagtcatgaatttgaatttgcagGTTGAGCCGAAGCGGCGGAAGAGATGACCATCATGCTGAATTAACTCATCTTGCGAATGCACCTCTTGCTGAATTTCACGGGCTATGTGGTAGCTGTTGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT