1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aattcctcaaacttgaaattatgattcatgattcttctactaaatgcaaattttagtacataagtaaattctaaagaccaaaattgatgatacttttcagGATGAAACAGAACCTTTCAAGCCTTTCCGCCACCGTTACTATGTGCCTTACAAAGCATCCGGAAGTACTGAACCCTTTTGGTATTCTGTCAAGATAGCTT
species | Glycine max |
transcript | GLYMA12G34960.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTGGATATGGACTACAGGGAACCACGAACTTGACTATGCTCCTGAAATT GATGAAACAGAACCTTTCAAGCCTTTCCGCCACCGTTACTATGTGCCTTAC
genomic: CTTGGATATGGACTACAGGGAACCATGAACTTGACTATGCTCCTGAAATTgtaagttgtc ... tacttttcagGATGAAACAGAACCTTTCAAGCCTTTCCGCCACCGTTACTATGTGCCTTAC
gcaaattttagtacataagtaaattctaaagaccaaaattgatgatacttttcagGATGAAACAGAACCTTTCAAGCCTTTCCGCCACCGTTACTATGTGCCTTACAAAGCATCCGGAAGTACTGAACCCTTTTGGTATTCTGTCAAGATAGCTT
tacttttc CT-rich tract
ataagtaaattctaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattcctcaaacttgaaattatgattcatgattcttctactaaatgcaaattttagtacataagtaaattctaaagaccaaaattgatgatacttttcagGATGAAACAGAACCTTTCAAGCCTTTCCGCCACCGTTACTATGTGCCTTACAAAGCATCCGGAAGTACTGAACCCTTTTGGTATTCTGTCAAGATAGCTT
- - cctcaaa
- - - - - - - - - - - - ttcatga
- - - - - - - - - - - - - - - - -cttctac
- - - - - - - - - - - - - - - - - - - - - aatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accaaaa