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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgtatactcgtctatgtaatgattatctaaatgtctctcatagtatcagatcagcgattgttgtttttatggtctaagtgcttgaataaatggttcttgacagGGAAATCAATATCGCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTGAGTATACTGAG

Basic information

species Glycine max
transcript GLYMA12G34750.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G34750.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G54260.1 (Arabidopsis thaliana), 3'ss of exon 10
gttgtatactcgtctatgtaatgatt-atctaaatgtctctcatagt--atcagatcagcgattgttgtttttatggtctaagt------gcttgaat------aaatg-gttcttgacagGGAAATCAATATCGCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTGAGTATACTGAG
||| |  |     | || | |   || ||||  |  |   || || |  ||    |   |  || |  |  || |     |||       |||||| |      ||||   |   | |||||||||||||||||| || || |||||||||||||  |||||| |||||||||||||||| |||
gttcttcagcaaacaatctgaaatttcatcttcactttattcgtacttcattttctggtcttttttcctccttttcaatcaagcatgtaagcttgagtgacttaaaatatatgacttacagGGAAATCAATATCGTCCTACGAAGATACCTTTGACATCTGTGAGGCCTTTTGAGTATACAGAG

upper sequence: GLYMA12G34750.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g03680.t01 (Vitis vinifera), 3'ss of exon 9
---gttgtata-ctcgtctatgtaatgattatctaaatgtct-ctcatagtatcagatcagcgattgttgtttttatggtctaagtgcttgaataaatggttcttgacagGGAAATCAATATCGCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTGAGTATACTGAG
   ||| |  | |   |   || |   || ||  |  | |   |  | ||| |  | |      || |  ||   ||  | |  ||| || ||   ||| ||  | | ||||||||||||| |||||||| ||||| || |||| ||| ||| |||||||||| || ||||||
gttgtttttcagcaaattcctgcataaatcattcatgttttgacatacagt-tttggttgatccttttaattcccatattgtgtgtgattcaa-gtatgatttat-atagGGAAATCAATACCGCCCAACCAAGATCCCATTGAAGTCAGTGAGGCCTTTTGAATACACTGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatcagcgattgttgtttttatggtctaagtgcttgaataaatggttcttgacagGGAAATCAATATCGCCCAACTAAGATACCTTTGATGTCTGTGCGGCCTTTTGAGTATACTGAG
                                             ttctt  CT-rich tract
        attgttgtttttat  TA-rich tract