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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtggcttttattcctgtcctgaattatgattgttgattggtgttttgtgtttaatctgggtgattttattttcctatttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCT

Basic information

species Glycine max
transcript GLYMA12G33800.3
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33800.3 (Glycine max), 3'ss of exon 4
lower sequence: PP1S201_25V6.1 (Physcomitrella patens), 3'ss of exon 4
------------gtggcttttattcctgtcc-tgaattatgattgttgattggtgt--tttgtgtttaatctgggtgattttattttcctatttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCT
            || |   || |   || |  ||     || || |   |||| |   || ||   | | ||| | |||  |   | | |  |   || || || ||| | || || ||||| || || || || ||| | ||  | ||||| |||| ||||||||| ||||| |||||||| || |||||||||||   
gtaagattttgagttgaggttttggatgcctgtgggacgtgcttttcttttggcggggttcgtaactga-ctgtgcgat--tgactgcgtggtggtagGGCATGCCATTTGGCGAAGCAAGCATTCGACGAGGCAATTGCCGAATTGGACACATTGAGTGAGGAGTCGTACAAGGACAGCACATTGATCATGCAACTA--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209729591|gb|BW651892.1|BW651892
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|193635649|gb|FK579290.1|FK579290
EST:     TCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|254326694|gb|GR832846.1|GR832846
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATT-CTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|192332263|gb|FK023912.1|FK023912
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAA
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAA
EST: gi|193713255|gb|FK653092.1|FK653092
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGA
EST: gi|192296880|gb|FG990241.1|FG990241
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|209725723|gb|BW659852.1|BW659852
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCNAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|16348906|gb|BI974501.1|BI974501
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|192321935|gb|FK012487.1|FK012487
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|207749276|gb|GD719546.1|GD719546
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|209711178|gb|BW676451.1|BW676451
EST:     AGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: AGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|58018472|gb|CX705214.1|CX705214
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|193722264|gb|FK656212.1|FK656212
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|163922893|gb|EH039539.1|EH039539
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|207784673|gb|GD757766.1|GD757766
EST:     TTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|192332264|gb|FK023913.1|FK023913
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|208270572|gb|GE071330.1|GE071330
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|192331039|gb|FK020259.1|FK020259
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|193338823|gb|FK303120.1|FK303120
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|192322094|gb|FK012198.1|FK012198
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|10848101|gb|BF070654.1|BF070654
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|15813734|gb|BI786009.1|BI786009
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|5666946|gb|AI930982.1|AI930982
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|192294937|gb|FG986656.1|FG986656
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTT
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTT
EST: gi|151399284|gb|EV269155.1|EV269155
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|254334704|gb|GR844489.1|GR844489
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|254345747|gb|GR859394.1|GR859394
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|209703893|gb|BW670748.1|BW670748
EST:     CTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: CTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|15336997|gb|BI497653.1|BI497653
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|151404414|gb|EV274224.1|EV274224
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTACGAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|254345746|gb|GR859393.1|GR859393
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|193393480|gb|FK359738.1|FK359738
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|193649336|gb|FK594989.1|FK594989
EST:     AGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: AGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|193599603|gb|FK550278.1|FK550278
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|14126273|gb|BG790711.1|BG790711
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|207824295|gb|GD793739.1|GD793739
EST:     TTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|209720671|gb|BW677514.1|BW677514
EST:     ATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: ATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|7041625|gb|AW471577.1|AW471577
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|208100163|gb|GD899383.1|GD899383
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAG
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAG
EST: gi|8825984|gb|BE209714.1|BE209714
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|208129625|gb|GD932369.1|GD932369
EST:     TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAA-G-AG                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
genomic: TAAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGGTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACA
EST: gi|192322095|gb|FK012199.1|FK012199
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAA-CAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|5677885|gb|AI939015.1|AI939015
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
EST: gi|193483988|gb|FK451957.1|FK451957
EST:     AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAGAG---                         CCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC
genomic: AAATTTCTCAGTTTTCTATTACGAGATCTTGAACTCTCCAGAAAG-GTTTgtggctttta ... atttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttgattggtgttttgtgtttaatctgggtgattttattttcctatttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCT
                  gtttaat  putative branch site (score: 4)
                                 ttttattttcctattt  putative PPT
                                attttattttcctatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtggcttttattcctgtcctgaattatgattgttgattggtgttttgtgtttaatctgggtgattttattttcctatttccagagCCTGTCATCTTGCAAAACAAGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGACAGCACCTTAATCATGCAACTTCT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG