1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagttccatgcaatgttttcttatttgagttgaaacattcatttctagcacaaagagagagtgttgaactttaacattaaattgatctcaatctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTCAATATTGCCCTTGATGATGTGTCAATTACTAGTCTGACTTTTGGCAAGG
species | Glycine max |
transcript | GLYMA12G33520.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGTCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAG GCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTCEST: gi|17401769|gb|BM178551.1|BM178551
genomic: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAGgtaaggagca ... atctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTC
EST: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAG GCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTCEST: gi|151402542|gb|EV272355.1|EV272355
genomic: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAGgtaaggagca ... atctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTC
EST: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAG GCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTCEST: gi|298192023|gb|HO036105.1|HO036105
genomic: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAGgtaaggagca ... atctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTC
EST: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAG GCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTCEST: gi|192303429|gb|FG997459.1|FG997459
genomic: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAGgtaaggagca ... atctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTC
EST: AAGCCGTGGTTGCCCAGTACAATGTCAGCCAGCTTATTACTCAGCGAGAG GCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTCEST: gi|151412668|gb|EV282480.1|EV282480
genomic: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAGgtaaggagca ... atctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTC
EST: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAG GCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTCEST: gi|151413130|gb|EV282938.1|EV282938
genomic: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAGgtaaggagca ... atctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTC
EST: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAG GCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTC
genomic: AAGCCGTGGTTGCCCAGTACAATGCCAGCCAGCTTATTACTCAGCGAGAGgtaaggagca ... atctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTC
tagcacaaagagagagtgttgaactttaacattaaattgatctcaatctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTCAATATTGCCCTTGATGATGTGTCAATTACTAGTCTGACTTTTGGCAAGG
tctttgt CT-rich tract
aactttaacattaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttccatgcaatgttttcttatttgagttgaaacattcatttctagcacaaagagagagtgttgaactttaacattaaattgatctcaatctttgtagGCTGTTAGTCGGGAAATCCGGAAGATTCTAACTGAAAGGGCTGCTAACTTCAATATTGCCCTTGATGATGTGTCAATTACTAGTCTGACTTTTGGCAAGG
- - -ccatgca
- - - - - - - - - - - - - - - - - acattca
- - - - - - - - - - - - - - - - - - - - - - - -gcacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtgtt