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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactattcgccttactcttttggaaccactcaagttgtgttctccttccaaatttggatccttttgccaacaacttttactgtatacattatacaatgttgcctagtttggttcactaactatagaggaaatacaataataatacgcagAGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTACCAAATACTAGATCCAGGCATTGGCATCCCGGCCAGCCAAACGCCACCTC

Basic information

species Glycine max
transcript GLYMA12G33430.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20811633|gb|BQ296111.1|BQ296111
EST:     ACGCGCCAACCCGAGGAACACCGTGTTTTCCACAACCTCTGACAACCACG                         AGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTAC
genomic: ACGCGCCAACCCGAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGgtaactattc ... taatacgcagAGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTAC
EST: gi|51334858|gb|CO978724.1|CO978724
EST:     ACGCGCCAACCCGAGGAACACCGTGTTTTCCACAACCTCTGACAACCACG                         AGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTAC
genomic: ACGCGCCAACCCGAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGgtaactattc ... taatacgcagAGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTAC
EST: gi|19347434|gb|BM892314.1|BM892314
EST:     ACGCGCCAACCCGAGGAACACCGTGTTTTCCACAACCTCTGACAACCACG                         AGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTAC
genomic: ACGCGCCAACCCGAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGgtaactattc ... taatacgcagAGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTAC
EST: gi|22522235|gb|BU081038.1|BU081038
EST:     ACGCGCCAACCCGAGGAACACCGTGTTTTCCACAACCTCTGACAACCACG                         AGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTAC
genomic: ACGCGCCAACCCGAGGAACACCGTGTTTTCCACAACCTCTGACAACCACGgtaactattc ... taatacgcagAGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatgttgcctagtttggttcactaactatagaggaaatacaataataatacgcagAGATTTGGCTCTCAAACTGTTCCCGGAATCCCACCACGCCATGCAATGTACCAAATACTAGATCCAGGCATTGGCATCCCGGCCAGCCAAACGCCACCTC
                   cactaac  putative branch site (score: 1)
                                  aaatacaataataata  TA-rich tract