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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttgatgtaacttgtcgtttcttggtaattctaatttttttggggttgtttgattatcgtaatgcatatactttttggccatcaaatgcagGATTTCTTGAGACAGAACAACACTGGAAAGATTTTGTGGCAGGTGTTTGGGGTTAATGCGGCAACTTTGTGCCTTTTTGGCATTCCTGAACATGAGGAAA

Basic information

species Glycine max
transcript GLYMA12G33120.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G33120.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0028g03810.t01 (Vitis vinifera), 3'ss of exon 3
gttttgatgtaacttgtcgtttcttggtaattctaatttttttggggttgtttgattatcgtaatgcatatactttttggccatcaaatgcagGATTTCTTGAGACAGAACAACACTGGAAAGATTTTGTGGCAGGTGTTTGGGGTTAATGCGGCAACTTTGTGCCTTTTTGGCATTCCTGAACATGAGGAAA
|| |  || | | ||     ||||||    | || ||     ||    | |||||  |   | |  ||  || | ||   |  |    ||||||||||  |  | |||||||| ||||||||| |  ||||||| |||||||| ||||| || |||||||||||||| ||||||||| |||||||||| || |
gtatacatattaattagtcattcttgtc--tcctgatcca--tgaatgtctttgaa-aagattactcaactaatattcaacatt---gtgcagGATTTTCTACGGCAGAACAATACTGGAAAGTTGCTGTGGCAAGTGTTTGGTGTTAAAGCTGCAACTTTGTGCCTCTTTGGCATTGCTGAACATGAAGAGA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttggggttgtttgattatcgtaatgcatatactttttggccatcaaatgcagGATTTCTTGAGACAGAACAACACTGGAAAGATTTTGTGGCAGGTGTTTGGGGTTAATGCGGCAACTTTGTGCCTTTTTGGCATTCCTGAACATGAGGAAA
           gtttgat  putative branch site (score: 5)
                             atatacttttt  TA-rich tract