1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aaggattttttaaaaagtgcgtaggtcctttctcctagtatatatatgcttctctacttgttacgttttggcttagcaagagctgaatcttatacaggagTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG
species | Glycine max |
transcript | GLYMA12G32060.4 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGEST: gi|17152950|gb|BM142883.1|BM142883
genomic: CTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCG
EST: CTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGEST: gi|17023367|gb|BM094401.1|BM094401
genomic: CTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCG
EST: AAAAACTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGEST: gi|17023367|gb|BM094401.1|BM094401
genomic: AAAAACTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCG
EST: AAAAACTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGEST: gi|4396229|gb|AI495226.1|AI495226
genomic: AAAAACTCTGACCGAGTCCGAGAGGCATCATGGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCG
EST: GGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGEST: gi|6848570|gb|AW350860.1|AW350860
genomic: GGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCG
EST: GGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGEST: gi|6848570|gb|AW350860.1|AW350860
genomic: GGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCG
EST: GGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCGEST: gi|7590116|gb|AW705876.1|AW705876
genomic: GGCGACACTGGATTCCGACGTGACCGTGTTTCCGGCCGGCGAAGCCTCCAGCAGCGCCGGTCCTTCTTCGTCCACCAAGAAGCCGAAGCGTTTCG
EST: GAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGEST: gi|7590116|gb|AW705876.1|AW705876
genomic: GAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGgtgcgtctc
EST: GAAGTGGAATGCGGTTTCCCTCTGGGCTTGGG
genomic: GAAGTGGAATGCGGTTTCCCTCTGGGCTTGGGgtgcgtctc
atgcttctctacttgttacgttttggcttagcaagagctgaatcttatacaggagTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG
aatcttata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggattttttaaaaagtgcgtaggtcctttctcctagtatatatatgcttctctacttgttacgttttggcttagcaagagctgaatcttatacaggagTTTGTAACCATGCTTTTCACTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTCTAG
- - - - - - -aaagtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctgaa