1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...catctgtatagactgaatagttgtctctgcttgcttttggtttacctcaaatcatgaggataacatattcaaacttactatacatgtattatttcctcagTTCGGATTATCTGGAAACAACCCTCAGCGAAGTCATCCTTCACAAATGTTGAGTGATCAGA
species | Glycine max |
transcript | GLYMA12G31400.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CAAACATTTCTGGCACATTACCTTCGCAGTCTCTTCTCCAACGGACACAG TTCGGATTATCTGGAAACAACCCTCAGCGAAGTCATCCTTCACAAATGTTG
genomic: CAAACATTTCTGGCACATTACCTTCGCAGTCTCTTCTCCAACGGACACAGgtttgtctca ... atttcctcagTTCGGATTATCTGGAAACAACCCTCAGCGAAGTCATCCTTCACAAATGTTG
ctcaaatcatgaggataacatattcaaacttactatacatgtattatttcctcagTTCGGATTATCTGGAAACAACCCTCAGCGAAGTCATCCTTCACAAATGTTGAGTGATCAGA
aacttac putative branch site (score: 2)
ttatttcctc putative PPT
tatacatgtattattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catctgtatagactgaatagttgtctctgcttgcttttggtttacctcaaatcatgaggataacatattcaaacttactatacatgtattatttcctcagTTCGGATTATCTGGAAACAACCCTCAGCGAAGTCATCCTTCACAAATGTTGAGTGATCAGA
catctgt
- - - - - gactgaa
- - - - - - - - - - - - ctctgct
- - - - - - - - - - - - - - - - gcttttg
- - - - - - - - - - - - - - - - - - - - - - - - - -tcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgtat