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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgcaatattcaggacatttatatgtcatttagtatgtctacatcctaactcatcaaacaatctcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG

Basic information

species Glycine max
transcript GLYMA12G31100.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040291|gb|BM308585.1|BM308585
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAG                         GTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
EST: gi|58025178|gb|CX711919.1|CX711919
EST:     TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTNCAGATGGANCAG                         GTTACGAGGAAAAGTTCTATTTTAATTCAGGTGACACTGGATTAAAG
genomic: TGGAACTGATCTTGGGATTTATAGAAAGTCCCATATTCCAGATGGACCAGgtatgcaata ... tcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatatgtcatttagtatgtctacatcctaactcatcaaacaatctcccctacagGTTACGAGGAAAAGTTCTATTTTAATCCAGGTGACACTGGATTTAAG
                         tcctaac  putative branch site (score: 1)
                                           tctcccctac  putative PPT
         atttagtat  TA-rich tract