1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tagcattggctgattcaagtgtctttctttatttacatgctgggttttaaatttcaatgttgctttggctgattttatgattttttgcttgactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTGAAGTTCCAGCTTAAGAAGGTGCTTTGCAT
species | Glycine max |
transcript | GLYMA12G31040.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|193534919|gb|FK489083.1|FK489083
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: GTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|151413165|gb|EV282973.1|EV282973
genomic: GTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCCTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|18716199|gb|BM522876.1|BM522876
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|24205182|gb|BU964435.1|BU964435
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|192315373|gb|FK009637.1|FK009637
genomic: AGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGCCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|14010951|gb|BG725881.1|BG725881
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|209724743|gb|BW677785.1|BW677785
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|19934524|gb|BQ079554.1|BQ079554
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|31310979|gb|CD396182.1|CD396182
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|298169144|gb|HO020504.1|HO020504
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|254329947|gb|GR839500.1|GR839500
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|120495150|gb|EH223317.1|EH223317
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAEST: gi|192315372|gb|FK009636.1|FK009636
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
EST: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGCCTCAACAAGGCAG GGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
genomic: AGTCATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCAGgcatgtttta ... gactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTA
tttaaatttcaatgttgctttggctgattttatgattttttgcttgactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTGAAGTTCCAGCTTAAGAAGGTGCTTTGCAT
gcttgac putative branch site (score: 4)
tgattttatgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagcattggctgattcaagtgtctttctttatttacatgctgggttttaaatttcaatgttgctttggctgattttatgattttttgcttgactttgcagGGAAGTTCCCTACGCTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACCAAGGCCATGGTGAAGTTCCAGCTTAAGAAGGTGCTTTGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG