1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taaacactttgtggaaataggtatctgtacgtaagtggcttgaaagaatgccactctatagaagtgtttagactaactgcttttttggcaaatatttcagGCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATTGCAAATTGATTCTTCAGTTTTTGCAACATCAAACAGCAGAGGTACCATT
species | Glycine max |
transcript | GLYMA12G30430.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTCCCAGCACA GCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATTEST: gi|19453281|gb|BM954691.1|BM954691
genomic: GGGGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTCCCAGCACAgtaagtgcct ... aatatttcagGCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATT
EST: GGGGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTCCCAGCACA GCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATTEST: gi|16349393|gb|BI974988.1|BI974988
genomic: GGGGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTCCCAGCACAgtaagtgcct ... aatatttcagGCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATT
EST: GGGGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTCCCAGCACA GCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATTEST: gi|58021743|gb|CX708484.1|CX708484
genomic: GGGGAGATTGTGGAGCCAAACATAGTCTACACTTCACTTGTCCCAGCACAgtaagtgcct ... aatatttcagGCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATT
EST: TGTCCCAGCACA GCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATT
genomic: TGTCCCAGCACAgtaagtgcct ... aatatttcagGCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATT
gaatgccactctatagaagtgtttagactaactgcttttttggcaaatatttcagGCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATTGCAAATTGATTCTTCAGTTTTTGCAACATCAAACAGCAGAGGTACCATT
gactaac putative branch site (score: 1)
aaatatttca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacactttgtggaaataggtatctgtacgtaagtggcttgaaagaatgccactctatagaagtgtttagactaactgcttttttggcaaatatttcagGCCTCATTACAATTTAAATCTACAAAGTATCTCTGTCAACGGCCAGACATTGCAAATTGATTCTTCAGTTTTTGCAACATCAAACAGCAGAGGTACCATT
- - - ctttgtg
- - - - - - - - - - - -tctgtac
- - - - - - - - - - - - - - - - - gtggctt
- - - - - - - - - - - - - - - - - - - - - - -gaatgcc