1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggtatttatatacatgtattttattatattgtaatctcttgaagaaaaatattcttgataacattgctctgtgtttgaaacttcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTTAAAGAAGCTGCAAAATCTTTCAAGGGAAAG
species | Glycine max |
transcript | GLYMA12G29550.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAG TTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTTEST: gi|19052857|gb|BM731524.1|BM731524
genomic: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGgtaggtattt ... tcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTT
EST: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAG TTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTTEST: gi|9902983|gb|BE611951.1|BE611951
genomic: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGgtaggtattt ... tcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTT
EST: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAG TTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTT
genomic: TTACAAGAGAAAGTGCCCCATCAGTCTTCGAAAATCCAATCAAGAAACAGgtaggtattt ... tcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTT
cttgaagaaaaatattcttgataacattgctctgtgtttgaaacttcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTTAAAGAAGCTGCAAAATCTTTCAAGGGAAAG
tgataac putative branch site (score: 2)
cttcactttt putative PPT
aaaaatattcttgata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggtatttatatacatgtattttattatattgtaatctcttgaagaaaaatattcttgataacattgctctgtgtttgaaacttcacttttagTTGTTGCTGTTTGCAACTTCAAATGATTCAGAGAAGTTGATCCCTGCATTTAAAGAAGCTGCAAAATCTTTCAAGGGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC