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gtctgatcgcacacttttctcctgtaaaaggttttttttttttcatgaatgcattgtttcattaaagttgtgctacagGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTC
species | Glycine max |
transcript | GLYMA12G29450.3 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG GTGGGTTTTCTTGTAAAAGGACCAATTEST: gi|9564602|gb|BE474111.1|BE474111
genomic: GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAGgtctgatcgc ... tgtgctacagGTGGTTTTTCTTGTAAAAGGACCAATT
EST: GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG GTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAEST: gi|20207861|gb|BQ133950.1|BQ133950
genomic: GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAGgtctgatcgc ... tgtgctacagGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACA
EST: GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG GTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCEST: gi|23731715|gb|BU763998.1|BU763998
genomic: GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAGgtctgatcgc ... tgtgctacagGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGC
EST: GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAG GTGGTTTTTCTTGTAAA
genomic: GGGTGACCATGTCAAATTGGTGAGGGCTGGAAAGCATCAGgtctgatcgc ... tgtgctacagGTGGTTTTTCTTGTAAA
gtaaaaggttttttttttttcatgaatgcattgtttcattaaagttgtgctacagGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTC
ttttttttttttcatg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgatcgcacacttttctcctgtaaaaggttttttttttttcatgaatgcattgtttcattaaagttgtgctacagGTGGTTTTTCTTGTAAAAGGACCAATTTACTTGGTCTGCATCAGCTGCACAGAAGAGCCTTATGAGTCACTAAGGGGGCAGTTGGAGCTTATTCATGGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT