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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagccatgttcctacttgatatatcactgtctttactcaatagatatcgtatttaacgactaaccaagaacataatctttctactgcagCATTTCTCTTTTATGCAGCTTTGGTAATAACAGCTACTTTTATCCTTATCTTCCACTTCATTCCTCTCTATGGCCAGACACACATAATGGTTTATATCGG

Basic information

species Glycine max
transcript GLYMA12G28940.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28940.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g00720.t01 (Vitis vinifera), 3'ss of exon 4
-----------------------------------gtagccatgttcc-tacttgatatatcactgtctttactcaatagat-atcgtatttaacgactaaccaagaacataatctttctactgcagCATTTCTCTTTTATGCAGCTTTGGTAATAACAGCTACTTTTATCCTTATCTTCCACTTCATTCCTCTCTATGGCCAGACACACATAATGGTTTATATCGG
                                     | | ||||    || ||   |  |   |   | || |  ||| || || |   || | ||||   |       || |  ||| | |||||| ||||||||||||||||| ||||| |||||||||   ||| | |||||  |||||||||| || |  ||||||||||| || ||||||||||| || ||
gtaatataagccttggttatccattatttcattcttcatctatgtcatataattttcacttatttacttatattttatatatgattgggcttgatgactttactttcttttacttgttcca-tgcagCTTTTCTCTTTTATGCAGCCTTGGTGATAACAGCTGTGTTTGTACTTATAATCCACTTCATCCCACAATATGGCCAGACCCATATAATGGTTTACATTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10236233|gb|BE805121.1|BE805121
EST:     ACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAG                         CATTTCTCTTTTATGCAGCTTTGGTAATAACAGCTACTTTTATCCTTATCT
genomic: ACGGGAAATTGAATCTGTTTCAGAAGTGTGGGATCTTGCTATGGAACCAGgtagccatgt ... tctactgcagCATTTCTCTTTTATGCAGCTTTGGTAATAACAGCTACTTTTATCCTTATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actcaatagatatcgtatttaacgactaaccaagaacataatctttctactgcagCATTTCTCTTTTATGCAGCTTTGGTAATAACAGCTACTTTTATCCTTATCTTCCACTTCATTCCTCTCTATGGCCAGACACACATAATGGTTTATATCGG
                       gactaac  putative branch site (score: 1)
                                         tctttctact  putative PPT
                                     ataatcttt  TA-rich tract