1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagtttgcttttcatatctcttctaaacaccatgctgttgatgtatgacatactgatgataccttcttcgttttatcaatgcttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGGACAAACGATACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATC
species | Glycine max |
transcript | GLYMA12G28730.2 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG GCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|298183850|gb|HO029063.1|HO029063
genomic: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAGgtgagtttgc ... cttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG GCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|151408377|gb|EV278185.1|EV278185
genomic: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAGgtgagtttgc ... cttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG GCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|6567403|gb|AW235014.1|AW235014
genomic: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAGgtgagtttgc ... cttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG GCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|192295002|gb|FG986721.1|FG986721
genomic: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAGgtgagtttgc ... cttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG GCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|7924283|gb|AW830309.1|AW830309
genomic: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAGgtgagtttgc ... cttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG GCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGEST: gi|37995772|gb|CF807361.1|CF807361
genomic: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAGgtgagtttgc ... cttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
EST: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAG GCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
genomic: ATATTGCAGAGCATGTAGTGGGGACAGGCTCTTTTGGTGTTGTTTTTCAGgtgagtttgc ... cttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAG
gttgatgtatgacatactgatgataccttcttcgttttatcaatgcttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGGACAAACGATACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATC
tactgat putative branch site (score: 2)
cttttatt putative PPT
ttttatcaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtttgcttttcatatctcttctaaacaccatgctgttgatgtatgacatactgatgataccttcttcgttttatcaatgcttttattagGCAAAATGTAGAGAAACAGGAGAAATTGTGGCCATCAAGAAAGTTCTCCAGGACAAACGATACAAGAATAGAGAGTTACAAATTATGCAAATGCTGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA