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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaactatactcttccattctcatttccacgcatcgtttctgtctcccaacttgatttgatttgatttgatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTC

Basic information

species Glycine max
transcript GLYMA12G28670.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G28670.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv12s0035g01130.t01 (Vitis vinifera), 3'ss of exon 5
----------------------------------------------------------------------------gtaaacta-tactcttccattctcatttccacgcatcgtttctgtctcc----caacttgatttgatttgatttgattttt--------cagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTC
                                                                            ||  |  | | | | |  ||    |    || |  | ||| || |||      ||| | |  ||  | |    ||  | ||        |||| ||||||||| ||||||||||||||| |||| |||||||| ||||||||| |   | | | | |   ||||||  |||||  |||   ||||||||| |
gtaagattttctgttccggttgatttttttccttatttaatttttgtttatttactcttatttgtttctgtggtgtgttcatcactgcccataaatgtataaaaacaagtgttgttgctttcttgtggacaattaggcttattatctcctgcctcttgtttttcccagGGCCACATTGAGCAGTGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTGGGCATTGGTTTAGACCAAGGATTGGACGTGCTGTATACCTTCCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208079367|gb|GD877095.1|GD877095
EST:     ACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: ACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|192299444|gb|FG990782.1|FG990782
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|298172183|gb|HO021775.1|HO021775
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCACACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|192315107|gb|FK009931.1|FK009931
EST:     TCGACTAAAGGGT-ATCAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: TCGACTAAAGGGTGA-CAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|6134030|gb|AW132480.1|AW132480
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|192333250|gb|FK026131.1|FK026131
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|213618494|gb|DB963395.1|DB963395
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|298184141|gb|HO029354.1|HO029354
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAC                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|41145772|gb|CK605983.1|CK605983
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|254316505|gb|GR828042.1|GR828042
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|24135648|gb|BU926158.1|BU926158
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|213587115|gb|DB959536.1|DB959536
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|7233496|gb|AW568841.1|AW568841
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|209709460|gb|BW668376.1|BW668376
EST:     TCGACTAAAGGGTGACAAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: TCGACTAAAGGGTGACAA-CGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|298191545|gb|HO039024.1|HO039024
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTTTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|12689164|gb|BG155500.1|BG155500
EST:     GACAACGCTTTGTTCTCATCTTCTGCCATGGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: GACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|208215289|gb|GE011072.1|GE011072
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|6134008|gb|AW132458.1|AW132458
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
EST: gi|15814101|gb|BI786376.1|BI786376
EST:     CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAAT                         GCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT
genomic: CTCGACTAAAGGGTGACAACGCTTTGTTCTCATCTTCTGCCATTGATAATgtaaactata ... gatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttccacgcatcgtttctgtctcccaacttgatttgatttgatttgatttttcagGCCCACATTGACCAGTGGATTGATTTTTCATCCTTGGAGATCGATGCTAATCTCATGAAATTGCTCCTACCAAGACTTGGATTTGCCCCATACCTTCCTC
                                         atttgat  putative branch site (score: 5)
                                               tttttc  CT-rich tract
                               atttgatttgatttga  TA-rich tract