1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaataaataattgatagagagacctgatccaatgtttagctactgtcacgtttgctctttggattatggtattattagaattcaaattttgaattttcagGTGGAGCCAAAGCGGCGGAAGAGATGACCATAATGCAGTAGTAGTAAACATGTGAGGTGTGTTTGGCTCTAGCTGAATTTGGCTGGCTCTATGGTAGCTT
species | Glycine max |
transcript | GLYMA12G20180.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG GTGGAGCCAAAGCGGCGGAAGAGATGACCATAATGCAGTAGTAGTAAACATEST: gi|18039386|gb|BM307680.1|BM307680
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgatttgtt ... gaattttcagGTGGAGCCAAAGCGGCGGAAGAGATGACCATAATGCAGTAGTAGTAAACAT
EST: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG GTGGAGCCAAAGCGGCGGAAGAGATGACCATAATGCAGTAGTAGTAAACATEST: gi|20075995|gb|BQ094778.1|BQ094778
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgatttgtt ... gaattttcagGTGGAGCCAAAGCGGCGGAAGAGATGACCATAATGCAGTAGTAGTAAACAT
EST: TTAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAG GTGGAGCCAAAGCGGCGGAAGAGATGACCATAATGCAGTAGTAGTAAACAT
genomic: TGAAGAAACCCCAAGCTACATTTTCTGCATCACTGGGAGCTGATGGCAAGgtgatttgtt ... gaattttcagGTGGAGCCAAAGCGGCGGAAGAGATGACCATAATGCAGTAGTAGTAAACAT
tcacgtttgctctttggattatggtattattagaattcaaattttgaattttcagGTGGAGCCAAAGCGGCGGAAGAGATGACCATAATGCAGTAGTAGTAAACATGTGAGGTGTGTTTGGCTCTAGCTGAATTTGGCTGGCTCTATGGTAGCTT
ttttc CT-rich tract
attatggtattattag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaataaataattgatagagagacctgatccaatgtttagctactgtcacgtttgctctttggattatggtattattagaattcaaattttgaattttcagGTGGAGCCAAAGCGGCGGAAGAGATGACCATAATGCAGTAGTAGTAAACATGTGAGGTGTGTTTGGCTCTAGCTGAATTTGGCTGGCTCTATGGTAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
aaataaa
- - - - - - - - - - - -ctgatcc
- - - - - - - - - - - - - - - - - - - - - ctgtcac