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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattctgtcaaagtttcattaattatccattatgaaaaaaatgcttaatggtattttcttgattattgctttctgctttttgcatccagCATTCCTCTCATACACTGCCTCAACAATTGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTTATGGCCAGACTAATATTTTGGTTTATACTGG

Basic information

species Glycine max
transcript GLYMA12G19960.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G19960.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv07s0031g02960.t01 (Vitis vinifera), 3'ss of exon 4
gtattctgtcaaagtttcattaattatccattatgaaaaaaatgcttaatggtattttcttgattattgctttctgc-tttttgcatccagCATTCCTCTCATACACTGCCTCAACAATTGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTTATGGCCAGACTAATATTTTGGTTTATACTGG
|||| |||   |  |||  |     ||  ||| | || |  || ||  |        ||||||||   ||||  ||  |||||| ||||||| || || | ||| || |||||  |||| || ||  || |  |  |  | ||||||||||| ||||| |||||||| || ||||| |||||||||| |||
gtatgctgatgagattttttattccatttattcttaacatcattctatac------ctcttgattg--gcttgatgtgtttttgtatccagCTTTTCTATTATATACAGCCTCCGCAATAGCTGTATCACTTGTACTCATCTTGTATTGTGCGCCCCGGTATGGCCAAACCAATATCTTGGTTTATATTGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaaaaatgcttaatggtattttcttgattattgctttctgctttttgcatccagCATTCCTCTCATACACTGCCTCAACAATTGCCGTGACATTGTTCTTGGTTTTGTATTGTGCTCCCCGTTATGGCCAGACTAATATTTTGGTTTATACTGG
                      tcttgat  putative branch site (score: 4)
                               ttgctttctgcttttt  putative PPT
                 tattttcttgattatt  TA-rich tract