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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtttacatgtgatttgcaacaatttaattttactttgtatgtatattgttataatagtatgtattgtcacttcagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTGTTGGATCAATCCATGCTAGCCAGG

Basic information

species Glycine max
transcript GLYMA12G16650.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G16650.1 (Glycine max), 3'ss of exon 4
lower sequence: AT5G54590.2 (Arabidopsis thaliana), 3'ss of exon 4
gtaagtt---tacatgtgatttgcaacaatttaattttactttgtatgtatattgttataa----tagtatgtattgtcacttcagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTGTTGGATCAATCCATGCTAGCCAGG
||||| |   | |        | || || ||||||    || |  |   | |   | | ||    |  | |      |   | ||||| |||||||||||||||||  ||||||||||||||||||||||  || |||||||||| |||  |||  ||
gtaagctgcttgctaaaaccattcaccattttaatgcatctcttaaacaacaacttcaaaactcatgttctaatcaattgttccagGCTGTTCCTCCTGTAATCCACAGAGATATCAAATCTTCCAACATCTTGCTGGATCAATCTATGAGAGCTCGG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aatttaattttactttgtatgtatattgttataatagtatgtattgtcacttcagGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAACATTCTGTTGGATCAATCCATGCTAGCCAGG
 atttaat  putative branch site (score: 4)
                                              tcacttc  putative PPT
     aattttactttgtatg  TA-rich tract