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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaagtgatagaattatgaagcaaaattatttttgtgtagttcattaaccttttttcctgtgatgcttacttctgtgatactcttttcattaacagTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACACTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACTTAAATGGAAAAGTTA

Basic information

species Glycine max
transcript GLYMA12G16550.1
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA12G16550.1 (Glycine max), 3'ss of exon 4
lower sequence: Vv19s0014g05130.t01 (Vitis vinifera), 3'ss of exon 4
gtaaaagtgatagaattatgaagcaaaattatttttgtgtagttcattaaccttttttcctgtgatgcttactt--ctgtgatactct----tttcattaacagTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACACTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACTTAAATGGAAAAGTTA
                      | |||    || ||   ||   | ||||||| |||   | | ||||||||||   | |||   | |    |||| |   ||||||||  | |||||||||||| | || |||||||| |||||||  ||||| |||||||||||| |||||||||||||||||||| |  | || ||||| |
----------------------gtaaaggagttatta-atataaccttaacctatttctgtataatgcttacttggttttgaacttttattctttcgtctgcagTTGTTTCCTAGTCTTAACAAGATAGTGTTCCTCGACGATGACATCGTGGTTCAAACTGATCTTACACCTCTGTGGGACATTGACATGGAAGGGAAAGTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9819527|gb|BE555040.1|BE555040
EST:     GTCCTAAGTATAATTCAGTAATGAATCACATTCGGATACATCTTCCAGAG                         TTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACACTGTGGTA
genomic: GTCCTAAGTATAATTCAGTAATGAATCACATTCGGATACATCTTCCAGAGgtaaaagtga ... tcattaacagTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACACTGTGGTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattaaccttttttcctgtgatgcttacttctgtgatactcttttcattaacagTTGTTCTCAAGTCTTAACAAGGTGGTCTTCCTCGATGATGACACTGTGGTACAAACTGATCTTTCACCTCTGTGGGACATTGACTTAAATGGAAAAGTTA
                      tgcttac  putative branch site (score: 2)
                                       ctcttttcatt  putative PPT
                                          ttttcattaa  TA-rich tract